Tools

National Center For Biomedical Ontology Tools

Jambalaya

A Protégé plug-in for visualizing Protege, OWL, and RDFS ontologies and knowledge bases

LexGrid

Support for a distributed network of lexical resources such as terminologies and ontologies

OBO Edit

A graph-based editor for OBO ontologies

Prompt

A set of tools for versioning, mapping, merging, and partitioning ontologies

Protégé

Domain-independent ontology editor and knowledge-acquisition platform

		BioPortal 1.0 A public Web portal that provides access to the Center's repositories as well as open-source ontology management, query, and visualization tools				Phenote A tool for annotating and storing biomedical phenotypes using terms from multiple ontologies

		OBO Converter A tool for converting OBO format files into OWL files and vice-versa

		Bioportal 2.0 BioPortal 2.0 will be released in July 2008. Alpha version available now				Ontology-Based Annotator Web Service Produces direct and semantically expanded annotations from raw text

		Open Biomedical Resources Annotation and indexing of biomedical data directly integrated with BioPortal 2.0. Users can locate biomedical data resources related to particular ontology concepts				Query Tissue Microarray Samples A graphical interface to browse the sample collection in TMAD using the NCI thesaurus terms and their hierarchical organization

		UMLS-Query Used to build applications for semi-automated sample annotation, terminology based browsers for tissue sample databases, and terminology research