View source for BioPortal 2.1 (Core 1014; UI 1019) Release Notes

BioPortal 2.1 consists of two NCBO software packages:  BioPortal Core (Label 1014) and BioPortal UI (Label 1019).

=New Features=
* New Annotator service
* New All Resources UI 
* New Search UI
* New BioPortal Look and Feel
* New labels on relations in the tree
* Adding reviews and projects 
* Ontology list on the Browse page 
* Add column on main page for group
* Add syndication for a specific ontology
* Filter out "[R].." relationships


=Resolved Bugs=
1157	Need to add "alpha" to "All Resources" tab
1159	Clicking on a Project in Projects tab results in an error
1194	Request to remove ontology - carol
1188	Need isFoundry added to /ontologies response XML
1153	Navigation Visualization doesn't scale correctly in IE
709	Additional inverse relationships gets introduced for OBO ontologies (has subclass and has part)
1131	Explore button on home page should take you to the metadata page for ontologies that are not explorable
1151	Full text name and/or description of resource
1180	Wrong relations returned by a concept service in OBO ontologies
1175	Category "Taxonomic Classification" has no instances
1023	Ontology ID mismatch on metadata page and URL
1154	Wrong hierarchy when going directly to a concept in OWL ontologies
1171	The children hierarchy service returns children only at the specified level, rather than *up to* specified level
1148	Ontology selection - missing scroll bar
1150	Max Results slider 
1163	Gene ontology not explorable on stage
1161	Gene ontology not explorable
1132	Class details do not work in IE on Windows (hangs the browser)
1145	OBO ontologies not explorable on the dev server
1108	[R]regulates link appear as "regulates" link in FlexViz
1097	Edit Metadata button - unable to add multiple categories
1127	NPO ontology is stuck in parsing
1118	Project page - updates needed for EFO project
1109	Don't show "Thing" concept in Full FlexViz
1110	Search of NCIT - not pointing to latest version
1117	EFO - stuck in Parsing
1098	Typo in message following ontology submission
1121	Update the version number for NPO
807	Ontology for disease genetic investigation Broken
1092	Request to remove ontology - NIF Gross Anatomy
1084	STAGE - Error with term Clarke's nuclei in Jump to and Search
1095	Notes Column Overlap in IE and Safari
999	MySQL exceptions when requesting too many services
990	Update on ontologies with problem with the REST services
801	Ontology 38633 does not support UI
953	We should preserve namespaces with concepts in OWL ontologies, even when we use preferred names
510	Adding ontologies to a project, maximize dialog doesn't use full screen
1057	More concepts with problem (after processing of OBS DB)
835	Plus/Minus sign usage in Visualization full window is inconsistent
486	A spurious phone number appears after user registration
991	Link to filter by group, should select menu highlight group filtered by?
800	Ontology 28837 does not support UI
961	Update on ontologies which has some conceptIDs as URL
1032	Duplication of ontology abbreviation on Home page for Gene Regulation ontology
984	Highly nested ontologies and tree-view
1038	Notes expanded past note panel
1006	DermLex - issue with display of preferred name
974	Display of BioPortal metadata ontology? 
596	In the Visualization tree: a click a node doesn't take move to that node
1043	Repeated labels in OBI - {definition, definition}
511	Add Ontologies To Project dialog has too many scrollbars!!
551	Ontology review display and editing use ontology ID instead of ontology name
925	Mapping not reciprocal - not shown for mapped to term
554	When editing marginal notes the create link button doesn't work
613	Expanding tree view frame causing odd behaviour
497	If I select a particular tab (e.g., Details), then this tab should open when I click on a different class
547	Clicking on a node on the graph view should open the corresponding concept.
543	Need to stay on the same tab when exploring an ontology
648	Concept tree navigation should be centered on the concept of focus
552	Ontology review feature is not working from the main ontology list
587	When window width is reduced, columns jump to the bottom of it
595	A clicked term has always the tab Details shown
628	Marginal Note - Title Field in Comment Display is too short (i.e., Comment Editor is significantly longer than display) and Missing Comments
975	Are sessions used or automatic time-out?
939	The note about the mappings should go on the mapping page
1068	Request to remove versions of SO-PHARM that were not loaded correctly
	Trish Whetzel
1079	MOD should be in the group PSI
1078	Ontology loading issues
808	Concept 4525/PathologicalPhenomenon makes BP REST services crashed
563	Mappings download seems to not work all the time
1069	Unable to upload/submit new version of NCIT
816	Add link back to NCBO
605	OBO parse exception : LexBIG Ontology load failed
851	Cannot specify Categories on the "Submit new ontology" page
1004	General Issue on 1/21/09 - local ontologies now remote
1187	Separate multiple values by new line rather than comma
1183	Do not show inverse relations on the Details page
1164	Resources - paging links to see list of resources from NextBio
1162	Alpha next to Resources not visible in tab name in IE
1160	Add project button should be more prominent
1158	Help/about page doesn't have any margin
1156	Virtual URLs for concepts don't work
1155	Change "MarginNote" to "Note" in the message after a note is created
1149	Semantic type - missing scroll bar
1143	Projects and reviews not visible in Safari
1142	Length of Subject field for Notes
1140	Wrong field for ontology upload on "Submit new version"
1139	The "*fields are required" string is in the wrong place
1113	RSS feed for OBI has wrong id for URL 
1107	Send Feedback page
1101	Email address usage for Support on BioPortal
1100	Request to remove Group MSI
1099	Explore button doesn't work on the new home page
1096	Filter mappings doesn't work on stage
1072	Need relationships on full path to root
1060	Unable to subscribe to overall BioPortal RSS feed
1059	OBO ontologies parse errors causing wrong search results
1015	Need to add a note in order to see the past one
971	When a user creates a note, it does not show up right away
957	Concepts with IDs starting with "@_" cannot be visualized in the UI