Difference between revisions of "Tutorial Examples"
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(New page: Sample Links * http://rest.bioontology.org/bioportal/search/Melanoma/?ontologyids=1353 * http://rest.bioontology.org/bioportal/virtual/rootpath/1353/2092003 * http://rest.bioontology.org/...) |
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* http://bioportal.bioontology.org/visualize/39228/DOID:399 | * http://bioportal.bioontology.org/visualize/39228/DOID:399 | ||
* http://rest.bioontology.org/bioportal/virtual/rootpath/1025/MP:0000929 | * http://rest.bioontology.org/bioportal/virtual/rootpath/1025/MP:0000929 | ||
| + | |||
| + | Sample user needs | ||
| + | |||
| + | * I need to restrict user input to a certain value set | ||
| + | |||
| + | Create a value set with the needed terms, submit to BioPortal and then use the auto complete widget or the search service. If the value set is a subtree of an existing ontology, use the search service restricted to that sub branch. | ||
| + | |||
| + | * I need to extract the disease branch from SNOMEDCT | ||
| + | |||
| + | Use the view extractor service or pick the desired root node and recursively call get child nodes; or pick the desired root node and get all paths to leaf terms from that node. | ||
| + | |||
| + | * I need to identify all terms mapped to UMLS CUI C0151779 | ||
| + | |||
| + | Use the search service, search the properties of every term for C0151779. | ||
| + | |||
| + | * I need to code/annotate free-text with ontology terms | ||
| + | |||
| + | Use the Annotator service (at BioPortal or as a Virtual Machine at your institution); or make sure to use the auto complete widgets in the web forms at content acquisition time! | ||
Revision as of 07:28, 13 November 2010
Sample Links
- http://rest.bioontology.org/bioportal/search/Melanoma/?ontologyids=1353
- http://rest.bioontology.org/bioportal/virtual/rootpath/1353/2092003
- http://rest.bioontology.org/bioportal/virtual/rdf/1353/2092003
- http://rest.bioontology.org/bioportal/virtual/ontology/1353/2092003
- http://purl.bioontology.org/ontology/SNOMEDCT/2092003
- http://bioportal.bioontology.org/visualize/virtual/1353/2092003
- http://bioportal.bioontology.org/visualize/42789/2092003
- http://bioportal.bioontology.org/visualize/42789/?conceptid=2092003
- http://bioportal.bioontology.org/ontologies/42789#widgets
- http://purl.bioontology.org/ontology/MSH/D008545
- http://bioportal.bioontology.org/visualize/39228/DOID:399
- http://rest.bioontology.org/bioportal/virtual/rootpath/1025/MP:0000929
Sample user needs
- I need to restrict user input to a certain value set
Create a value set with the needed terms, submit to BioPortal and then use the auto complete widget or the search service. If the value set is a subtree of an existing ontology, use the search service restricted to that sub branch.
- I need to extract the disease branch from SNOMEDCT
Use the view extractor service or pick the desired root node and recursively call get child nodes; or pick the desired root node and get all paths to leaf terms from that node.
- I need to identify all terms mapped to UMLS CUI C0151779
Use the search service, search the properties of every term for C0151779.
- I need to code/annotate free-text with ontology terms
Use the Annotator service (at BioPortal or as a Virtual Machine at your institution); or make sure to use the auto complete widgets in the web forms at content acquisition time!