Difference between revisions of "NCBO Hackathon"

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March 26-27, 2012
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The [http://www.bioontology.org/ National Center for Biomedical Ontology] will hold a Hackathon as one of our [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination and Outreach] events.
  
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More details coming soon!
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'''Venue:''' [http://stanford.edu Stanford University]
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* Medical School Office Building, 1265 Welch Road, Room X303, Stanford, CA 94305-5479
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* [http://bmir.stanford.edu/pages/view.php/maps_and_information Maps]
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'''Date:''' '''March 26-27, 2012''' 
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'''Organization:''' [mailto:whetzel@stanford.edu Trish Whetzel] (NCBO / Stanford University)
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'''Registration:''' Early registration is $25, but spots are limited so register [https://www.certain.com/system/profile/web/index.cfm?PKwebID=0x314432abcd now!]. 
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The '''NCBO Hackathon''' will consist of two days of intensive hands-on sessions to facilitate the development of applications using NCBO Web services. We will devote extensive time to your software development project and will have presentations covering a range of topics from high-level application design to low-level coding. You will be able to:
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* Brainstorm ideas for applications
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* Discuss coding issues, performance tuning, and future development plans
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* Learn about the suite of NCBO Web services and how they are (and have been!) used in applications. Examples include access to ontologies, search, mappings, term proposals, text annotation, and biomedical resource search (the “Resource Index”)
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* Hear about the design of our RDF triple store and learn how to access the triple-store directly from your application using the SPARQL query language
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'''DOCUMENTATION:'''
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* [http://www.bioontology.org/wiki/index.php/NCBO_REST_services NCBO Web services documentation]
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* [http://sparql.bioontology.org/examples BioPortal SPARQL query examples]
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* [http://www.bioontology.org/wiki/index.php/File:Whetzel_NCBO-Hackathon.pdf Slides] - this includes links to Sample code examples, GoogleDoc examples, and applications using the Web services.
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* [http://www.stanford.edu/~manuelso/ncbohack/index.html#%281%29 BioPortal SPARQL Endpoint Slides] - this includes information on the BioPortal SPARQL endpoint
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* [http://www.bioontology.org/wiki/index.php/File:Hackathon_Programming_TaskswithSPARQL.pdf Programming Tasks]
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'''AGENDA:'''
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* '''Monday, March 26'''
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** 8:30 - Continental Breakfast
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** 9:00 - Participant Introductions
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** 10:15 - List all Ontologies, Search, Term Details
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*** Coding
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** 12:00 - Lunch
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** 1:00 - Sean Mooney - Applications of the Annotator
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** 2:00 Term Mappings, Term Proposals, Web Widgets
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*** Coding
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** 3:15 - Annotator Overview
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*** Coding
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* '''Tuesday, March 27'''
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** 8:30 - Continental Breakfast
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** 9:00 - Resource Index Web service Overview
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*** Coding
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** 10:00 BioPortal SPARQL Endpoint Overview
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*** SPARQL Query exercises
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** 12:00 - Lunch
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** 1:00 - Coding
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** 2:00 - Project Summaries
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** Remainder of day - Coding
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----

Latest revision as of 13:11, 11 July 2012

The National Center for Biomedical Ontology will hold a Hackathon as one of our Dissemination and Outreach events.

Venue: Stanford University

  • Medical School Office Building, 1265 Welch Road, Room X303, Stanford, CA 94305-5479
  • Maps

Date: March 26-27, 2012

Organization: Trish Whetzel (NCBO / Stanford University)

Registration: Early registration is $25, but spots are limited so register now!.

The NCBO Hackathon will consist of two days of intensive hands-on sessions to facilitate the development of applications using NCBO Web services. We will devote extensive time to your software development project and will have presentations covering a range of topics from high-level application design to low-level coding. You will be able to:

  • Brainstorm ideas for applications
  • Discuss coding issues, performance tuning, and future development plans
  • Learn about the suite of NCBO Web services and how they are (and have been!) used in applications. Examples include access to ontologies, search, mappings, term proposals, text annotation, and biomedical resource search (the “Resource Index”)
  • Hear about the design of our RDF triple store and learn how to access the triple-store directly from your application using the SPARQL query language

DOCUMENTATION:

AGENDA:

  • Monday, March 26
    • 8:30 - Continental Breakfast
    • 9:00 - Participant Introductions
    • 10:15 - List all Ontologies, Search, Term Details
      • Coding
    • 12:00 - Lunch
    • 1:00 - Sean Mooney - Applications of the Annotator
    • 2:00 Term Mappings, Term Proposals, Web Widgets
      • Coding
    • 3:15 - Annotator Overview
      • Coding
  • Tuesday, March 27
    • 8:30 - Continental Breakfast
    • 9:00 - Resource Index Web service Overview
      • Coding
    • 10:00 BioPortal SPARQL Endpoint Overview
      • SPARQL Query exercises
    • 12:00 - Lunch
    • 1:00 - Coding
    • 2:00 - Project Summaries
    • Remainder of day - Coding



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