Difference between revisions of "Meetings and Events"

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On the [http://datebook.stanford.edu:88/cBiO_Calendar internal calendar].
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== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==
  
 +
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015
  
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== Upcoming meetings ==
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'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 2015
  
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*'''In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot'''
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'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014
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**Jul 30- August 4, 2006, Fortaleza, Brazil.
 
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** [http://www.swissprot20.org/ http://www.swissprot20.org/]
 
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** Attending: Michael Ashburner, Suzi
 
  
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*'''ISMB, 2006'''
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'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014
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**August 6-10, 2006.  Fortaleza, Brazil.
 
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** [http://ismb2006.cbi.cnptia.embrapa.br/ http://ismb2006.cbi.cnptia.embrapa.br/]
 
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** Attending: Michael, Suzi (Keynote speaker in Bio-ontologies)
 
  
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*'''IEEE Computational Systems Bioinformatics, 2006'''
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'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''
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*August 14-18, 2006. Stanford University
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*Georgetown, DC, June 18-19, 2014
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**[http://www.lifesciencessociety.org/CSB2006/index.html http://www.lifesciencessociety.org/CSB2006/index.html]
+
 
−
** Attending: Mark Musen (Keynote speaker), rest of Stanford group (tutorial in bioontologies/semantic web)
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'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''
 +
*Buffalo, NY, June 23, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''
 +
*Buffalo, NY, June 24-25, 2014.
 +
 
 +
'''[[NCBO Hackathon 2013]]'''
 +
* Stanford University, Stanford, CA, April 29-30, 2013
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* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''
 +
 
 +
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''
 +
*Buffalo, NY, May 15-16, 2013
 +
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''
 +
*Orlando, FL, February 11-12, 2013
 +
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.
 +
 
 +
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''
 +
* Paris, November 29, 2012
 +
 
 +
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''
 +
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.
 +
 
 +
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''
 +
*November 8-9, 2012
 +
 
 +
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''
 +
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012
 +
 
 +
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012
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* NCBO Web services: Powering Semantically Aware Applications
 +
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.
 +
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''
 +
 
 +
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]
 +
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,
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*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]
 +
 
 +
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]
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* Buffalo, NY, June 11-13, 2012.
 +
 
 +
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''
 +
*Baltimore, MD, April 24, 2012.
 +
 
 +
'''[[Clinical and Translational Science Ontology Workshop]]'''
 +
*Baltimore, MD, April 25-26, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies and Their Applications]]'''
 +
*Stanford University, CA, March 15, 2012.
 +
 
 +
'''[[AMIA CRI Demo]]'''
 +
*San Francisco, CA, March 22, 2012.
 +
 
 +
'''[[NCBO Hackathon]]'''
 +
*Stanford University, CA, March 26-27, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies]]'''
 +
*New York Botanical Gardens, Bronx, NY, February 5, 2012.
 +
 
 +
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications
 +
*London, UK, December 7-9, 2011
 +
 
 +
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''
 +
*Kyoto, Japan, August 22-26, 2011
 +
 
 +
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]'''
 +
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]
 +
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.
 +
 
 +
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] '''
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*Atlanta, GA, June 29, 2011.
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*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]
 +
 
 +
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''
 +
*San Diego, CA, March 16-19, 2011.
 +
 
 +
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''
 +
*Baltimore, MD, December 8-9, 2010.
 +
 
 +
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''
 +
*Tutorial, University at Buffalo, October 23, 2010.
  
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*'''Anatomy Ontology Workshop'''
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'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''
−
**September 8-9, 2006, Seattle
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*September 9-15, 2010, Cape Town, South Africa,  
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**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
 
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**Attending: Michael, Suzi, Monte, Barry, Fabian, Melissa, David
 
  
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*'''Fall NCBO Project Meeting'''
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'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''
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**Oct. 23-25, 2006, Stanford
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*June 26-27, 2010, Stanford, CA.
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** All Hands meeting
 
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** Advisory Comm. & NIH Program & Science officers invited
 
  
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*'''American Society of Human Genetics'''
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'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]'''  
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**October 9-13, 2006, New Orleans, LA
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*Toronto, Canada, May 11-14, 2010.
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**Presentation to find collaborators, also ontology workshop
 
  
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*'''Disease Ontology Workshop'''
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'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''
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**In association with FOIS 2006 (Formal Ontology and Information Systems)
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*March 15-16, 2010, NIST, Gaithersburg, MD
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**November 6-8, 2006, John Hopkins University, Baltimore
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*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
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**[[Workshop on Ontology of Diseases | information on the Disease Ontology Workshop]]
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*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]
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**Attending: Barry, Suzi, Chris, Rex, Monte, Fabian
 
  
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*'''PATO meeting'''
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'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''
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**November 30-December 2, 2006, Stanford University Clark Center
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*February 26-28, 2010, Keio University, Tokyo, Japan
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** [[PATO Meeting | information about the PATO Meeting]]
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*Conference co-sponsored with the Japanese Center for Ontological Research
 +
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.
  
−
----
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''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''
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'''2007'''
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*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK
  
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*'''Ontology Interoperability in Biomedicine'''
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'''[[The Future of the Foundational Model of Anatomy]]'''  
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**March 27-30, 2007, Dagstuhl, Germany
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*November 11-12, 2009, Stanford, CA
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**Invitation only
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*NCBO Dissemination Workshop
 +
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]
  
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*'''Clinical trial ontology workshop'''
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'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''
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**Mid-May 2007, near FDA
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*October 10-11, 2009, Buffalo, NY
 +
*Co-sponsored with the University at Buffalo
 +
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]
  
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*'''Dagstuhl Seminarium: Ontologies and Text Mining for Life Sciences'''
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'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''
−
**July 23-27, 2007: Dagstuhl, Germany
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*September 3-4, 2009, University of Milan, Biccaca, Italy
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**Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
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*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
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** Attending: Michael Ashburner
+
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]
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**[http://www.dagstuhl.de/07301 http://www.dagstuhl.de/07301]
 
  
−
*'''Spatial reasoning over ontologies'''
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'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''
−
**Fall, 2007
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*July 27-29, 2009, Buffalo, NY
 +
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 +
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]
  
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*'''Ontology Training workshops for training workshops'''
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'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''
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**Aug. ??? 2007, Buffalo
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*July 25-26, 2009, Buffalo, NY
 +
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
 +
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]
  
−
*'''NECTAR Clinical Research Ontology Workshop'''
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'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]'''  
−
**???, 2007, Bethesda ???
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*Mar 30-Apr 1, 2009, Miami, FL
 +
*Co-sponsored by the International Association for Dental Research
 +
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"]
  
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*'''All NCBCs Ontology workshop'''
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'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]'''  
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**???, 2007 with Andreas Califano, Columbia, NY???
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*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
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*Co-organized with the Japanese Center for Ontological Research
  
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* '''Phenotype Ontology (Upper Level) workshop'''
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'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]'''  
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**???
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*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])
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*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 +
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]
  
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== Past meetings ==
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'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''
 +
*September 3-4, 2008, Dallas, TX
 +
*NCBO Dissemination Workshop
 +
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]
  
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*'''NCBC All Hands Meeting'''
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'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''
−
**July 17-19, 2006, Washington, DC
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*July 19, 2008, Toronto, Canada.
−
**Attending: Mark, Daniel, Deborah, Nigam, Barry, Fabian, Louis Goldberg, Jim, Monte, Michael, Chris Callendar, Simona Carini, Chris Mungall, Nicole
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*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
 +
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]
  
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* '''Core 1 & 2 Project Meeting'''
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'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''
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** June 27-28, 2006, Berkeley
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*June 20, 2008, Minneapolis, MN
−
** Attending: Mark, Daniel, Archana, Lynn, Nigam, Julie (Stanford); Suzi, Chris M., Sima, Shu, Nicole (Berkeley); Chris Chute, Jim, Harold (Mayo); Peggy (UVic); Sherri (NIH)
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*Held in conjunction with the Evolution 2008 meeting.
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** Working plan for core 1 & 2 goals
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*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 +
*[http://kaboodle.nescent.org/?q=node/58 Report]
  
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* '''Core 1 & 2 Meeting'''
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'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''
−
** June 9, 2006, Berkeley
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*May 19-20, 2008, Denver, CO
−
** Attending:  Daniel, Archana, Lynn, Nigam, Dilvan Moreira (Stanford); Suzi, Chris M., Shu, Nicole (Berkeley); Jim, Harold (Mayo); Chris Callendar (UVic)
+
*NCBO Dissemination Workshop
  
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*'''Training Course in Biomedical Ontologies'''
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'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''
−
**[http://ontology.buffalo.edu/06/os2/index.html http://ontology.buffalo.edu/06/os2/index.html]
+
*April 12-13, 2008, Buffalo, NY
−
**May 21-24, 2006, Schloss Dagstuhl, Germany
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*NCBO Tutorial (Faculty: Barry Smith)
−
**Barry
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*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]
  
−
*'''NSF/RCN workshop on ontology and phylogeny'''
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'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]'''  
−
**May 21-24, St. Louis
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*March 27-28, 2008, Newark, NJ
−
**Attending: Michael, Suzi, Monte
+
*NCBO Dissemination Workshop
 +
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]
  
−
*'''Phenotype Annotation Meeting'''
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''
−
**May 17-20, Hinxton, UK
+
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]
−
**Attending: Monte, Erik, Michael, George, Gillian, Suzi, Chris M., Mark G., Fabian, Nigam
+
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research
−
**[[Agenda PaTO]]
 
  
−
*'''Fish Evolutionary Biology Working Group Meeting'''
+
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''
−
**April 9-11, National Evolutionary Synthesis Center (NESCent), Durham, NC
+
*July 23-27, 2007: Schloss Dagstuhl, Germany
−
**Attending: Monte, Paula, Mark G., Chris M.
+
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 +
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]
  
−
*'''Gene Ontology Workshop'''
+
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''
−
**March 31-April 3, 2006, St. Croix
+
*July 21, 2007, Vienna, Austria
−
** Attending: Barry, Michael, Suzi, Chris M.
+
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)
  
−
* '''Bio-IT LifeSciences Conference'''
+
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''
−
**April 3-6, 2006, Boston, MA'''
+
*June 20-23, 2007, Schloss Dagstuhl, Germany
−
**[http://www.lifesciencesexpo.com/live/26/ http://www.lifesciencesexpo.com/live/26/]
+
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
−
** Speaker: Michael Ashburner, Ben Franklin Award Lecture.
 
  
−
*'''Biomedical Image Ontology Workshop'''
+
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''
−
**March 24-25, 2006, Stanford University
+
*June 12-13th, 2007, University of Utah, Salt Lake City, UT
−
**[http://www.loni.ucla.edu/CCB/ CCB NCBC] and others with biomedical image ontologies
 
−
** Attending: Barry, Suzi, Stanford Group
 
  
−
*'''Immunology Ontology Workshop: NIAID'''
+
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''
−
**March 21-22, 2006, Gaitherburg, MD
+
*May 16-17 2007, NIH Campus, Bethesda, MD
−
** Attending: Mark (Session chair), Suzi (speaker), Barry
+
*NCBO Dissemination Workshop
 +
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]
  
−
*'''Semantic Technology Conference'''
+
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''
−
**March 6-9, 2006, San Jose, California
+
*March 27-30, 2007, Dagstuhl, Germany
−
** [http://www.semantic-conference.com/ http://www.semantic-conference.com/ ]
+
*NCBO Dissemination Workshop
−
** Attending:  Mark Musen(talk), Deborah McGuinness(keynote, tutorial), Daniel Rubin and Kaustubh Superkar(talk),
+
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report]  
  
−
*'''NIH NCRR Animal Models workshop'''
+
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑]
−
**March 6-7, 2006, Bethesda, MD
+
*December 21, 2006  
−
** Attending: Monte
+
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]
  
−
*'''[[Minutes & presentations, March 2-4, 2006 Project meeting|cBio Project Meeting]]'''
+
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]
−
**March 2-4, 2006, Stanford University
+
*December 1-2, 2006, Clark Center, Stanford, CA
−
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
+
*NCBO Dissemination Workshop
−
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html http://www.smi.stanford.edu/research/cbio/cbio_meeting.html]
 
−
**Entire project, NIH Program & Lead Science officers
 
  
−
*'''BIRN ontology workshop'''
+
'''Connecting BioPAX to Other Biomedical Ontologies'''  
−
**February 28-March 1, 2006, Stanford
+
*November 20-21, 2006, MIT, Boston, MA
−
** Attending: Carol, Chris C., Suzi, Barry, Stanford group
+
*NCBO Tutorial (Faculty: Barry Smith)
  
−
*'''NLM vocabulary collection and distribution meeting'''
+
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''
−
**February 27-28, 2006, NLM, Washington, DC
+
*AMIA Anual Symposium, November 14, 2006, Washington DC
−
** Attending: Chris M., Chris C., Harold, Deepak, Jim, Tom
+
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]
  
−
*'''NIAID meeting'''
+
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ↑]'''
−
**February, 2006, DC
+
*AMIA Annual Symposium, November 12, 2006, Washington DC
−
**Attending: Mark M.
+
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)
  
−
*'''cBio Phenotype Annotation tool specification'''
+
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''
−
**February 21-23, 2006, LBNL
+
*AMIA Annual Symposium, November 11, 2006, Washington DC,
−
** Attending: Melissa & Sierra (ZFIN), Suzi, Chris M., Mark G., John, Shu (Berkeley)
+
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]
  
−
*'''Mini-Syposium on Semantic Enrichment of Scientific Literature'''
+
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''
−
**February 20, 2006 at the European Bioinformatics Institute, Hinxton
+
*November 8, 2006, Baltimore, MD
−
**Attending: Michael Ashburner [talk]
+
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 +
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication]  
  
−
*'''cBio OBD specification'''
+
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''
−
**February 17, 2006, LBNL
+
*November 6-7, 2006, John Hopkins University, Baltimore
−
** Attending: Ida & Ben (UCSF), Daniel (Stanford), Suzi, Chris M., Mark G., Sima, Shu (Berkeley)
+
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference
  
−
*'''FuGO meeting'''
+
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]'''
−
** February 13-15, 2006, Penn, Philadelphia, PA
+
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
−
**[http://fugo.sourceforge.net/news/index.php  http://fugo.sourceforge.net/news/index.php]
+
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
−
**Attending: Barry
 
  
−
*'''Fourth Semantic Interoperability for E-Government Conference'''
+
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''
−
** February 9-10, 2006, MITRE, McLean, VA
+
*September 8-9, 2006, University of Washington, Seattle, WA
−
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
+
*NCBO Dissemination Workshop
−
**Attending: Barry
+
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology]  
  
−
*'''NIAID BRC3 and Inter Operability Working Group meeting'''
+
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]
−
** February 6-7, 2006, Philadelphia, PA
+
*August 27, 2006, Maastricht, Netherlands.
−
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm]
+
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters)
−
** Attending: Suzi, Barry
+
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]
  
−
*'''PharmGKB and cBiO meeting'''
+
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''
−
** January 31, 2006, Stanford
+
*August 14-18, 2006.  Stanford University
−
** Attending: Daniel (Stanford), Suzi & Sima (Berkeley), Teri Klein, Tina Boussard, Mark Woon, Russ Altman (PharmGKB)
+
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)
  
−
*'''Pacific Symposium on Biocomputing, 2006'''
+
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"
−
**Maui, HI, January 2-6, 2006
+
*Jul 30-August 4, 2006, Fortaleza, Brazil.
−
**Michael Ashburner, Keynote.
+
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.
−
**[http://psb.stanford.edu/ http://psb.stanford.edu/]
 
  
−
*'''NCBC Meeting'''
+
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''.
−
**Dec. 15-16, NIH
+
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
−
**Attending: Mark, Suzi, Monte
+
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;
−
**Introducting new NCBCs to each other and NIH staff
 
  
−
*'''Phenotype Annotation Meeting'''  
+
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''
−
**December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
+
*July 23-26, 2006, Stanford, CA
−
** Attending
+
*NCBO Tutorial (Faculty: Chris Callendar)
−
*** From ZFIN: Monte Westerfield, Erik Segerdell, Melissa Haendel, Paula Mabee
 
−
*** From FlyBase: Gillian Millburn
 
−
*** From Berkeley: Suzi Lewis, Chris Mungall, Mark Gibson
 
−
*** From Victoria: Peggy Storey, Chris Callendar, Sean Falconer
 
−
** Define requirements of phenotype annotation tools
 
  
−
*'''International Biocurator Meeting'''
+
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''
−
**Asilomar, December 8-11, 2005
+
*July 17-19, 2006, NIH, Bethesda, MD
−
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
+
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
−
**Attending: Monte Westerfield (speaker), Chris Mungall (speaker), Sima
 
  
−
*'''National Bioinformatics Network, South Africa'''
+
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''
−
**December 2, 2005, University of Cape Town.
+
*July 19, 2006, NIH, Bethesda, MD
−
**Michael Ashburner, Keynote talk at Official Opening.
+
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
 +
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]
 
   
 
   
−
*'''Phenotype Ontology Content Workshop'''
+
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''
−
**Nov. 19-20, 2005, CSHL
+
*May 21-24, 2006, Schloss Dagstuhl, Germany
−
** Attending
+
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
−
*** From cBio: Mark, Nigam, Suzi, Chris, John, Michael, George, Monte, Erik (not Barry)
+
 
−
*** Jonathan Bard, XSPAN
+
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''
−
*** Thomas Bittner, Lou Goldberg, Fabian Neuhaus, NCOR
+
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
−
*** Judy Blake, MGD
+
*NCBO Dissemination Workshop
−
*** Mike Cherry, Jane Lomax, GO
+
 
−
*** Rex Chisolm, Pascale Gaudet, NuGene project
+
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''
−
*** Rachel Drysdale, FlyBase
+
*March 31-April 3, 2006, St. Croix
−
*** Akhilesh Pandey, OMIM
+
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]
−
*** Anne Kwitek, RGD
+
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication]
−
*** Yves Lussier, SNOMED
+
 
−
** [[Media:PhenoAgenda.doc]]
+
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''
 +
*March 24-25, 2006, Stanford, CA
 +
*NCBO Dissemination Workshop
 +
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology
 +
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]
 +
 
 +
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''
 +
*March 21-22, 2006, Gaitherburg, MD
 +
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
 +
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]
  
−
*'''Stanford/Mayo/Berkeley Meetings'''
+
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''
−
**Nov. 21, 10am-3pm, Stanford; Nov. 22, 10am-3pm, Berkeley
+
*March 6-7, 2006, Bethesda, MD
−
** Attending
+
*Presentation by Monte Westerfield on Animal Models and Ontologies
−
*** From Stanford: Mark, Daniel, Archana, Lynn, Nigam
 
−
*** From Berkeley: Suzi, Chris, Sima, Shu, Nomi
 
−
*** From Mayo: Deepak, Harold, Jim
 
  
−
*'''Forbes Dewey Meeting'''
+
'''BIRN ontology workshop'''
−
**Late October, MIT
+
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]
−
**Michael Ashburner, chair
+
*February 28-March 1, 2006, Stanford, CA
−
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
+
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]
 +
*NCBO Dissemination Workshop
 +
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology
  
−
*'''Genome Informatics Meeting'''
+
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''
−
**Oct. 28-Nov. 1, CSHL
+
*February 13-15, 2006, Philadelphia, PA
−
**Suzi will gave presentation on cBio.
+
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]
−
**Birds of a feather sessions, one on ontology.
 
  
−
*'''Workshop on Bio-Ontologies'''
+
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]
−
**October 28, 2005, Buffalo, NY
+
*December 8-11, 2005, Asilomar, CA
−
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf http://ontology.buffalo.edu/05/bio-ontologies.pdf]
+
*Attending: Sima Misra, Chris Mungall, Monte Westerfield
−
**Presenting: Suzi, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
−
**Training session on making ontologies better
 
  
−
*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology, Caxambu, Brazil'''
+
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑]
−
**October, 2006
+
*Nov. 19-20, 2005, Cold Spring Harbor, NY
−
**Michael Ashburner, Keynote.
+
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
  
−
*'''Applied Biosystems Inc., Science Meeting, Asilomar'''
+
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''  
−
**September 2005
+
*October 28, 2005, Buffalo, NY
−
**Michael Ashburner, Keynote.
+
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider
  
−
*'''MGED8, Bergen'''
+
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''  
−
**September, 2005
+
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)
−
**Michael Ashburner, Keynote
+
*October 28, 2005, Buffalo, NY
 +
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]

Latest revision as of 11:59, 19 October 2018

NCBO-Sponsored Dissemination and Training Events 2005-2015

International Conference on Biomedical Ontology, Lisbon, July 27-30, 2015

The Role of Ontology in Big Cancer Data, National Cancer Institute, Bethesda, MD, May 12-13, 2015

Information Artifact Ontologies, Workshop organized as part of FOIS, Rio de Janeiro, Brazil, September 22, 2014

5th International Conference on Biomedical Ontologies (ICBO 2014), Houston, TX, October 6-9, 2014

Protein Ontology Workshop

  • Georgetown, DC, June 18-19, 2014

Tutorial on Ontology for Image Informatics

  • Buffalo, NY, June 23, 2014

Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop

  • Buffalo, NY, June 24-25, 2014.

NCBO Hackathon 2013

PRO-PO-GO Meeting: Challenges of Ontology Coordination Across Organisms

  • Buffalo, NY, May 15-16, 2013
  • The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.

Second CTSA Ontology Workshop

  • Orlando, FL, February 11-12, 2013
  • This is the second meeting of the new IKFC Clinical and Translational Science Ontology Affinity Group which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.

SWAT4LS2012 Tutorial

  • Paris, November 29, 2012

Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities

  • AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.

Overview Presentation for the NCBC Showcase

  • November 8-9, 2012

Course on Anatomy Ontologies

Bio-Ontologies 2012 Long Beach, CA July 13-14, 2012

  • NCBO Web services: Powering Semantically Aware Applications

International Conference on Biomedical Ontology, Graz, Austria, July 21-25, 2012.

Semantics of Biodiversity

Immunology Ontologies and Their Applications in Processing Clinical Data

  • Buffalo, NY, June 11-13, 2012.

CTSA Ontology Tutorial

  • Baltimore, MD, April 24, 2012.

Clinical and Translational Science Ontology Workshop

  • Baltimore, MD, April 25-26, 2012.

Introduction to Bio-Ontologies and Their Applications

  • Stanford University, CA, March 15, 2012.

AMIA CRI Demo

  • San Francisco, CA, March 22, 2012.

NCBO Hackathon

  • Stanford University, CA, March 26-27, 2012.

Introduction to Bio-Ontologies

  • New York Botanical Gardens, Bronx, NY, February 5, 2012.

SWAT4LS Tutorial: NCBO Web Services and Development of Semantic Applications

  • London, UK, December 7-9, 2011

DBCLS Hackathon

  • Kyoto, Japan, August 22-26, 2011

2nd International Conference on Biomedical Ontology ICBO ↑

  • Videos of all presentations and discussions are available here
  • Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.

How to Build a Biomedical Ontology ↑

The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research ↑

  • San Diego, CA, March 16-19, 2011.

Infectious Disease Ontology Dissemination Workshop ↑

  • Baltimore, MD, December 8-9, 2010.

Introduction to Ontology Building ↑

  • Tutorial, University at Buffalo, October 23, 2010.

Medinfo Workshop on Infectious Disease Ontology↑

  • September 9-15, 2010, Cape Town, South Africa,

W3C Workshop – RDF Next Steps↑

  • June 26-27, 2010, Stanford, CA.

Formal Ontology in Information Systems ↑

  • Toronto, Canada, May 11-14, 2010.

Ontology Summit 2010: Creating the Ontologists of the Future ↑

  • March 15-16, 2010, NIST, Gaithersburg, MD
  • Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
  • Communique

3rd Interdisciplinary Ontology Conference ↑

  • February 26-28, 2010, Keio University, Tokyo, Japan
  • Conference co-sponsored with the Japanese Center for Ontological Research
  • Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.

Ontologies for the Virtual Physiological Human ↑

  • February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK

The Future of the Foundational Model of Anatomy

From Aristotle to the Universal Core: Ontology Training Event ↑

  • October 10-11, 2009, Buffalo, NY
  • Co-sponsored with the University at Buffalo
  • Webcast

Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes ↑

  • September 3-4, 2009, University of Milan, Biccaca, Italy
  • NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
  • Follow-up from 2008 NCBO Clinical Phenotypes meeting

International Conference on Biomedical Ontology (ICBO) ↑

  • July 27-29, 2009, Buffalo, NY
  • Co-sponsored by the National Center for Ontological Research and the University at Buffalo
  • Proceedings

From Basic Formal Ontology to the Information Artifact Ontology ↑

  • July 25-26, 2009, Buffalo, NY
  • NCBO Tutorial co-located with the International Conference on Biomedical Ontology (ICBO); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
  • Webcast

International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy ↑

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
  • Co-organized with the Japanese Center for Ontological Research

Evolutionary Biology and Ontologies ↑

  • January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology (SICB)
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes ↑

How to Make Useful Ontologies for Biomedicine ↑

  • July 19, 2008, Toronto, Canada.
  • NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
  • Slides

Evolutionary Biology and Ontologies ↑

  • June 20, 2008, Minneapolis, MN
  • Held in conjunction with the Evolution 2008 meeting.
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

The Ontology of Relations ↑

  • May 19-20, 2008, Denver, CO
  • NCBO Dissemination Workshop

Introduction to Biomedical Ontologies ↑

  • April 12-13, 2008, Buffalo, NY
  • NCBO Tutorial (Faculty: Barry Smith)
  • Webcast

Ontologies of Cellular Networks ↑

  • March 27-28, 2008, Newark, NJ
  • NCBO Dissemination Workshop
  • Publication

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • February 26-27, 2008, Tokyo, Japan, organized in conjunction with InterOntologies 08
  • NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research

Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences ↑

  • July 23-27, 2007: Schloss Dagstuhl, Germany
  • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
  • Proceedings

Ontologies for Biomedicine – How to Make and Use Them ↑

  • July 21, 2007, Vienna, Austria
  • NCBO Tutorial at ISMB 2007 (Faculty: Nigam Shah and Barry Smith)

Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research ↑

Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More ↑

  • June 12-13th, 2007, University of Utah, Salt Lake City, UT

Clinical Trial Ontology ↑

  • May 16-17 2007, NIH Campus, Bethesda, MD
  • NCBO Dissemination Workshop
  • OCRe Ontology

Dagstuhl Seminar: Ontology Interoperability in Biomedicine ↑

  • March 27-30, 2007, Dagstuhl, Germany
  • NCBO Dissemination Workshop
  • Seminar Report

The OBO Foundry - A Gold Standard Approach to Ontology Evaluation ↑

Phenotype Ontology ↑ Announcement

  • December 1-2, 2006, Clark Center, Stanford, CA
  • NCBO Dissemination Workshop

Connecting BioPAX to Other Biomedical Ontologies

  • November 20-21, 2006, MIT, Boston, MA
  • NCBO Tutorial (Faculty: Barry Smith)

Panel on the Future of HL7 ↑

Genomics Knowledge Representation for Clinical Trials ↑

  • AMIA Annual Symposium, November 12, 2006, Washington DC
  • Tutorial (Faculty: Nigam Shah, Barry Smith, and others)

Biomedical Imaging Ontologies ↑

  • AMIA Annual Symposium, November 11, 2006, Washington DC,
  • Follow-Up Meeting to NCBO Dissemination Workshop on the Ontology of Images

Biomedical Ontology in Action ↑

  • November 8, 2006, Baltimore, MD
  • Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
  • Publication

Ontology of Diseases ↑

  • November 6-7, 2006, John Hopkins University, Baltimore
  • NCBO Dissemination Workshop organized in association with the FOIS 2006 (Formal Ontology and Information Systems) Conference

Ontology Development ↑

  • September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)

Anatomy Ontology Workshop ↑

Tutorial on Standards and Ontologies ↑

Ontologies for Biomedicine – How to Make and Use Them ↑

On the Need and Utility of Ontologies ↑"

  • Jul 30-August 4, 2006, Fortaleza, Brazil.
  • Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.

Functional Genomics Investigation Ontology (FuGO) 2nd Workshop ↑.

  • July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
  • This meeting led to creation of OBI Ontology for Biomedical Investigations;

Ontology Visualization with Jambalaya ↑

  • July 23-26, 2006, Stanford, CA
  • NCBO Tutorial (Faculty: Chris Callendar)

Scientific Ontologies: NCBC Special Interest Group Meeting ↑

  • July 17-19, 2006, NIH, Bethesda, MD
  • i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [1]

Ontology: A Vision for the Future and Its Realization ↑

Training Course in Biomedical Ontologies ↑

Phenotype Annotation Meeting ↑

  • May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
  • NCBO Dissemination Workshop

Principles of Biomedical Ontology Design ↑

The Ontology of Images ↑

  • March 24-25, 2006, Stanford, CA
  • NCBO Dissemination Workshop
  • Led to establishment of standards for BIRNLex Ontology
  • Webcast

Ontology Workshop: Focus on Immunology ↑

  • March 21-22, 2006, Gaitherburg, MD
  • Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
  • Publication; Ontology

Navigating the Translational Researcher Through a Complex of Animal and Biological Resources ↑

  • March 6-7, 2006, Bethesda, MD
  • Presentation by Monte Westerfield on Animal Models and Ontologies

BIRN ontology workshop Agenda

  • February 28-March 1, 2006, Stanford, CA
  • Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" Part 1 Part 2
  • NCBO Dissemination Workshop
  • Led to creation of BIRNLex ontology

Functional Genomics Investigation Ontology (FuGO): First Workshop ↑

International Biocurator Meeting ↑

  • December 8-11, 2005, Asilomar, CA
  • Attending: Sima Misra, Chris Mungall, Monte Westerfield

Phenotype Ontology Content Workshop ↑

  • Nov. 19-20, 2005, Cold Spring Harbor, NY
  • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield

Workshop on Bio-Ontologies ↑

  • October 28, 2005, Buffalo, NY
  • Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider

Making Ontologies Better ↑

  • NCBO Training Workshop (Faculty: David Hill and Barry Smith)
  • October 28, 2005, Buffalo, NY
  • Slides
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