Difference between revisions of "Meetings and Events"

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== Upcoming meetings ==
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== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==
  
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*'''In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot'''
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'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015
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**Jul 30- August 4, 2006, Fortaleza, Brazil.
 
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** [http://www.swissprot20.org/ http://www.swissprot20.org/]
 
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** Attending: Michael Ashburner, Suzanna Lewis
 
  
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*'''ISMB, 2006'''
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'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 2015
−
**August 6-10, 2006, Fortaleza, Brazil.
 
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** [http://ismb2006.cbi.cnptia.embrapa.br/ http://ismb2006.cbi.cnptia.embrapa.br/]
 
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** Attending: Michael Ashburner, Suzanna Lewis (Keynote speaker for Bio-ontologies SIG)
 
  
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*'''IEEE Computational Systems Bioinformatics, 2006'''
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'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014
−
*August 14-18, 2006. Stanford University
+
 
−
**[http://www.lifesciencessociety.org/CSB2006/index.html http://www.lifesciencessociety.org/CSB2006/index.html][http://www.wow-gold-sell.com/ wow gold]
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'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014
−
** Attending: Mark Musen (Keynote), rest of Stanford group (tutorial in bioontologies/semantic web)
+
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''
 +
*Georgetown, DC, June 18-19, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''
 +
*Buffalo, NY, June 23, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''
 +
*Buffalo, NY, June 24-25, 2014.
 +
 
 +
'''[[NCBO Hackathon 2013]]'''
 +
* Stanford University, Stanford, CA, April 29-30, 2013
 +
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''
 +
 
 +
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''
 +
*Buffalo, NY, May 15-16, 2013
 +
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''
 +
*Orlando, FL, February 11-12, 2013
 +
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.
 +
 
 +
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''
 +
* Paris, November 29, 2012
 +
 
 +
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''
 +
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.
 +
 
 +
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''
 +
*November 8-9, 2012
 +
 
 +
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''
 +
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012
 +
 
 +
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012
 +
* NCBO Web services: Powering Semantically Aware Applications
 +
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.
 +
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''
 +
 
 +
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]
 +
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,
 +
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]
 +
 
 +
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]
 +
* Buffalo, NY, June 11-13, 2012.
 +
 
 +
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''
 +
*Baltimore, MD, April 24, 2012.
 +
 
 +
'''[[Clinical and Translational Science Ontology Workshop]]'''
 +
*Baltimore, MD, April 25-26, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies and Their Applications]]'''
 +
*Stanford University, CA, March 15, 2012.
 +
 
 +
'''[[AMIA CRI Demo]]'''
 +
*San Francisco, CA, March 22, 2012.
 +
 
 +
'''[[NCBO Hackathon]]'''
 +
*Stanford University, CA, March 26-27, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies]]'''
 +
*New York Botanical Gardens, Bronx, NY, February 5, 2012.
 +
 
 +
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications
 +
*London, UK, December 7-9, 2011
  
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*'''Tutorial on Standards and Ontologies
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'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''
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**Medical Informatics Europe
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*Kyoto, Japan, August 22-26, 2011
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**August 27, 2006, Maastricht, Netherlands.
 
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**http://ontology.buffalo.edu/06/MIE_Tutorial.htm
 
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**Attending: Werner Ceusters, Barry Smith
 
  
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*'''Anatomy Ontology Workshop'''
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'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]'''  
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**September 8-9, 2006, Seattle
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*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]
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**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
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*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.
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**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield   
 
  
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*'''American Society of Human Genetics'''
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'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] '''  
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**October 9-13, 2006, New Orleans, LA
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*Atlanta, GA, June 29, 2011.
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**[http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml]
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*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]
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**Presentation to find collaborators, also ontology workshop
 
  
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*'''Workshop on Philosophy of Biology'''
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'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''
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**October 14-15, 2006, Buffalo, NY
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*San Diego, CA, March 16-19, 2011.
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**http://ontology.buffalo.edu/06/pob
 
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**Attending: Werner Ceusters, Barry Smith
 
  
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*'''Fall NCBO Project Meeting'''
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'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''
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**Oct. 23-25, 2006, Stanford
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*Baltimore, MD, December 8-9, 2010.
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** All Hands meeting
 
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** Advisory Comm. & NIH Program & Science officers invited
 
  
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*'''Workshop on Ontology of Diseases'''
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'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''
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**In association with FOIS 2006 (Formal Ontology and Information Systems)
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*Tutorial, University at Buffalo, October 23, 2010.
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**November 6-7, 2006, John Hopkins University, Baltimore
 
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**[[Workshop on Ontology of Diseases | information on the Disease Ontology Workshop]]
 
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**Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, Monte Westerfield
 
  
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*'''Biomedical Ontology in Action'''
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'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''
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**KR-MED 2006
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*September 9-15, 2010, Cape Town, South Africa,  
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**November 8, 2006, Baltimore
 
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**http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html
 
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**Attending: Werner Ceusters, Barry Smith
 
  
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*'''Tutorial on Genomics Knowledge Representation for Clinical Trials'''
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'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''
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**AMIA Annual Symposium
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*June 26-27, 2010, Stanford, CA.
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**November 12, 2006, Washington DC
 
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http://ontology.buffalo.edu/06/AMIAWorkshop.htm
 
  
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*'''Panel on the Future of HL7'''
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'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]'''  
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**AMIA Anual Symposium
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*Toronto, Canada, May 11-14, 2010.
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**November 14, 3.30-5.00pm., Washington DC
 
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**http://ontology.buffalo.edu/HL7/panel.htm
 
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Attending: Barry Smith
 
  
−
*'''PATO meeting'''
+
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''
−
**November 30-December 2, 2006, Stanford University Clark Center
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*March 15-16, 2010, NIST, Gaithersburg, MD
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** [[PATO Meeting | information about the PATO Meeting]]
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*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
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**Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
+
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]
  
−
----
+
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''
−
'''2007'''
+
*February 26-28, 2010, Keio University, Tokyo, Japan
 +
*Conference co-sponsored with the Japanese Center for Ontological Research
 +
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.
  
−
*'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine'''
+
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''
−
**March 27-30, 2007, Dagstuhl, Germany
+
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK
−
**Invitation only
 
  
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*'''Workshop on Clinical Trial Ontology'''
+
'''[[The Future of the Foundational Model of Anatomy]]'''  
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**May 16-17 2007, venue TBD
+
*November 11-12, 2009, Stanford, CA
−
**[[Workshop on Clinical Trial Ontology | information about Clinical Trial Ontology workshop]]
+
*NCBO Dissemination Workshop
 +
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]
  
−
*'''Training Course on Logical and Computational Tools for Biomedical Ontology Development'''
+
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''
−
**June 20-23, 2007: Schloss Dagstuhl, Germany
+
*October 10-11, 2009, Buffalo, NY
−
**Attending: Fabian Neuhaus, Barry Smith.
+
*Co-sponsored with the University at Buffalo
 +
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]
  
−
*'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences'''
+
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''
−
**July 23-27, 2007: Schloss Dagstuhl, Germany
+
*September 3-4, 2009, University of Milan, Biccaca, Italy
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**Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
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*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
−
** Attending: Michael Ashburner
+
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]
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**[http://www.dagstuhl.de/07301 http://www.dagstuhl.de/07301]
 
  
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*'''Spatial reasoning over ontologies'''
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'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''
−
**Date and Venue tbd
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*July 27-29, 2009, Buffalo, NY
 +
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 +
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]
  
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*'''All NCBCs Ontology workshop'''
+
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''
−
**Fall 2007, with Andreas Califano, Columbia, NY
+
*July 25-26, 2009, Buffalo, NY
 +
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
 +
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]
  
−
* '''Phenotype Ontology (Upper Level) workshop'''
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'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]'''  
−
**2007?
+
*Mar 30-Apr 1, 2009, Miami, FL
 +
*Co-sponsored by the International Association for Dental Research
 +
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"]
  
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== Past meetings ==
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]'''
 +
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
 +
*Co-organized with the Japanese Center for Ontological Research
  
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*'''Functional Genomics investigation Ontology (FuGO) 2nd Workshop'''
+
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]'''  
−
**July 24-28, 2006, Hinxton, UK
+
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])
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**http://fugo.sourceforge.net/news/index.php
+
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
−
**Attending: Barry Smith
+
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]
  
−
*'''9th International Protege Conference'''
+
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''
−
**July 23-26, 2006, Stanford, CA
+
*September 3-4, 2008, Dallas, TX
−
**[http://protege.stanford.edu/conference/2006/ http://protege.stanford.edu/conference/2006/]
+
*NCBO Dissemination Workshop
−
** Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar
+
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]
  
−
*'''NCBC All Hands Meeting'''
+
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''
−
**July 17-19, 2006, NIH, Bethesda, MD
+
*July 19, 2008, Toronto, Canada.
−
**Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield 
+
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
−
**[http://www.bisti.nih.gov/ahm2006/ http://www.bisti.nih.gov/ahm2006/]
+
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]
−
**[http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm Ontology: A Vision for the Future and Its Realization] Dissemination Event
 
−
***Organizers: Mark Musen, Barry Smith
 
  
−
* '''Core 1 & 2 Project Meeting'''
+
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''
−
** June 27-28, 2006, Berkeley, CA
+
*June 20, 2008, Minneapolis, MN
−
** Attending:  Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall,  ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute,  Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
+
*Held in conjunction with the Evolution 2008 meeting.
−
** Working plan for core 1 & 2 goals
+
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 +
*[http://kaboodle.nescent.org/?q=node/58 Report]
  
−
* '''Core 1 & 2 Meeting'''
+
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''
−
** June 9, 2006, Berkeley, CA
+
*May 19-20, 2008, Denver, CO
−
** Attending:  Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)
+
*NCBO Dissemination Workshop
  
−
*'''Training Course in Biomedical Ontologies'''
+
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''
−
**[http://ontology.buffalo.edu/06/os2/index.html http://ontology.buffalo.edu/06/os2/index.html]
+
*April 12-13, 2008, Buffalo, NY
−
**May 21-24, 2006, Schloss Dagstuhl, Germany
+
*NCBO Tutorial (Faculty: Barry Smith)
−
**Attending: Werner Ceusters, Mark Musen, Barry Smith
+
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]
  
−
*'''NSF/RCN workshop on ontology and phylogeny'''
+
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]'''  
−
**May 21-24, St. Louis, MO
+
*March 27-28, 2008, Newark, NJ
−
**Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
+
*NCBO Dissemination Workshop
 +
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]
  
−
*'''Phenotype Annotation Meeting'''
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''
−
**May 17-20, Hinxton, UK
+
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]
−
**Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis,  Gillian Millburn,  Chris Mungall,  Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
+
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research
−
**[[Agenda PaTO | PATO meeting agenda]]
 
  
−
*'''Fish Evolutionary Biology Working Group Meeting'''
+
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''
−
**April 9-11, National Evolutionary Synthesis Center (NESCent), Durham, NC
+
*July 23-27, 2007: Schloss Dagstuhl, Germany
−
**Attending: Mark Gibson,Paula Mabee,  Chris Mungall, Monte Westerfield
+
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 +
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]
  
−
*'''Gene Ontology Workshop'''
+
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''
−
**March 31-April 3, 2006, St. Croix
+
*July 21, 2007, Vienna, Austria
−
** Attending: Michael Ashburner, Suzanna Lewis, Chris Mungall, Barry Smith
+
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)
  
−
* '''Bio-IT LifeSciences Conference'''
+
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''
−
**April 3-6, 2006, Boston, MA'''
+
*June 20-23, 2007, Schloss Dagstuhl, Germany
−
**[http://www.lifesciencesexpo.com/live/26/ http://www.lifesciencesexpo.com/live/26/]
+
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
−
** Speaker: Michael Ashburner, Ben Franklin Award Lecture.
 
  
−
*'''Workshop on Ontology of Images'''
+
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''
−
**March 24-25, 2006, Stanford, CA
+
*June 12-13th, 2007, University of Utah, Salt Lake City, UT
−
**[http://www.loni.ucla.edu/CCB/ CCB NCBC] and others with biomedical image ontologies
 
−
**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
−
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
 
  
−
*'''Immunology Ontology Workshop: NIAID'''
+
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''
−
**March 21-22, 2006, Gaitherburg, MD
+
*May 16-17 2007, NIH Campus, Bethesda, MD
−
** Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
+
*NCBO Dissemination Workshop
 +
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]
  
−
*'''Semantic Technology Conference'''
+
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''
−
**March 6-9, 2006, San Jose, CA
+
*March 27-30, 2007, Dagstuhl, Germany
−
** [http://www.semantic-conference.com/ http://www.semantic-conference.com/ ]
+
*NCBO Dissemination Workshop
−
** Attending:  Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)
+
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report]  
  
−
*'''NIH NCRR Animal Models workshop'''
+
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑]
−
**March 6-7, 2006, Bethesda, MD
+
*December 21, 2006  
−
** Attending: Monte Westerfield
+
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]
  
−
*'''[[Minutes & presentations, March 2-4, 2006 Project meeting|cBio Project Meeting]]'''
+
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]
−
**March 2-4, 2006, Stanford, CA
+
*December 1-2, 2006, Clark Center, Stanford, CA
−
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
+
*NCBO Dissemination Workshop
−
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html http://www.smi.stanford.edu/research/cbio/cbio_meeting.html]
 
−
**Entire project, NIH Program & Lead Science officers
 
  
−
*'''BIRN ontology workshop'''
+
'''Connecting BioPAX to Other Biomedical Ontologies'''  
−
**February 28-March 1, 2006, Stanford, CA
+
*November 20-21, 2006, MIT, Boston, MA
−
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
+
*NCBO Tutorial (Faculty: Barry Smith)
  
−
*'''NLM vocabulary collection and distribution meeting'''
+
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''
−
**February 27-28, 2006, NLM, Washington, DC
+
*AMIA Anual Symposium, November 14, 2006, Washington DC
−
** Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig
+
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]
  
−
*'''NIAID meeting'''
+
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ↑]'''
−
**February, 2006, Washington, DC
+
*AMIA Annual Symposium, November 12, 2006, Washington DC
−
**Attending: Mark Musen
+
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)
  
−
*'''cBio Phenotype Annotation tool specification'''
+
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''
−
**February 21-23, 2006, Berkeley, CA
+
*AMIA Annual Symposium, November 11, 2006, Washington DC,  
−
** Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)
+
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]
  
−
*'''Mini-Syposium on Semantic Enrichment of Scientific Literature'''
+
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''
−
**February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
+
*November 8, 2006, Baltimore, MD
−
**Attending: Michael Ashburner (speaker)
+
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 +
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication]
  
−
*'''cBio OBD specification'''
+
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''
−
**February 17, 2006, Berkeley, CA
+
*November 6-7, 2006, John Hopkins University, Baltimore
−
** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
+
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference
  
−
*'''FuGO meeting'''
+
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]'''
−
** February 13-15, 2006, Philadelphia, PA
+
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
−
**[http://fugo.sourceforge.net/news/index.php  http://fugo.sourceforge.net/news/index.php]
+
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
−
**Attending: Barry Smith
 
  
−
*'''Fourth Semantic Interoperability for E-Government Conference'''
+
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''
−
** February 9-10, 2006, MITRE, McLean, VA
+
*September 8-9, 2006, University of Washington, Seattle, WA
−
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
+
*NCBO Dissemination Workshop
−
**Attending: Barry Smith
+
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology]  
  
−
*'''NIAID BRC3 and Inter Operability Working Group meeting'''
+
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]
−
** February 6-7, 2006, Philadelphia, PA
+
*August 27, 2006, Maastricht, Netherlands.
−
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm]
+
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters)
−
** Attending: Suzanna Lewis, Barry Smith
+
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]
  
−
*'''PharmGKB and cBiO meeting'''
+
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''
−
** January 31, 2006, Stanford, CA
+
*August 14-18, 2006.  Stanford University
−
** Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)
+
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)
  
−
*'''Pacific Symposium on Biocomputing, 2006'''
+
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"
−
**January 2-6, 2006, Maui, HI
+
*Jul 30-August 4, 2006, Fortaleza, Brazil.
−
**Michael Ashburner (Keynote)
+
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.
−
**[http://psb.stanford.edu/ http://psb.stanford.edu/]
 
  
−
*'''NCBC Meeting'''
+
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''.
−
**Dec. 15-16, NIH, Bethesda, MD
+
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
−
**Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
+
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;
−
**Introducting new NCBCs to each other and NIH staff
 
  
−
*'''Phenotype Annotation Meeting'''
+
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''
−
**December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
+
*July 23-26, 2006, Stanford, CA
−
** Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
+
*NCBO Tutorial (Faculty: Chris Callendar)
−
** Define requirements of phenotype annotation tools
 
  
−
*'''International Biocurator Meeting'''
+
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''
−
**December 8-11, 2005, Asilomar, CA
+
*July 17-19, 2006, NIH, Bethesda, MD
−
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
+
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
−
**Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)
 
  
−
*'''National Bioinformatics Network, South Africa'''
+
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''
−
**December 2, 2005, University of Cape Town, SA
+
*July 19, 2006, NIH, Bethesda, MD
−
**Michael Ashburner (Keynote)
+
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
 +
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]
 
   
 
   
−
*'''Phenotype Ontology Content Workshop'''
+
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''
−
**Nov. 19-20, 2005, Cold Spring Harbor, NY
+
*May 21-24, 2006, Schloss Dagstuhl, Germany
−
** Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
+
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
−
** [[Media:PhenoAgenda.doc]]
+
 
 +
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''
 +
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
 +
*NCBO Dissemination Workshop
 +
 
 +
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''
 +
*March 31-April 3, 2006, St. Croix
 +
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]
 +
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication]
 +
 
 +
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''
 +
*March 24-25, 2006, Stanford, CA
 +
*NCBO Dissemination Workshop
 +
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology
 +
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]
 +
 
 +
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''
 +
*March 21-22, 2006, Gaitherburg, MD
 +
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
 +
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]
  
−
*'''Stanford/Mayo/Berkeley Meetings'''
+
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''
−
**Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
+
*March 6-7, 2006, Bethesda, MD
−
** Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam,  (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
+
*Presentation by Monte Westerfield on Animal Models and Ontologies
  
−
*'''Forbes Dewey Meeting'''
+
'''BIRN ontology workshop'''
−
**Late October, MIT, Cambridge, MA
+
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]
−
**Michael Ashburner, chair
+
*February 28-March 1, 2006, Stanford, CA
−
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
+
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]
 +
*NCBO Dissemination Workshop
 +
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology
  
−
*'''Genome Informatics Meeting'''
+
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''
−
**Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
+
*February 13-15, 2006, Philadelphia, PA
−
**Suzanna Lewis (organizer, speaker)
+
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]
  
−
*'''Workshop on Bio-Ontologies'''
+
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]
−
**October 28, 2005, Buffalo, NY
+
*December 8-11, 2005, Asilomar, CA
−
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf http://ontology.buffalo.edu/05/bio-ontologies.pdf]
+
*Attending: Sima Misra, Chris Mungall, Monte Westerfield
−
**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
−
**Training session: making ontologies better
 
  
−
*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
+
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑]
−
**October, 2005, Caxambu, Brazil
+
*Nov. 19-20, 2005, Cold Spring Harbor, NY
−
**Michael Ashburner (Keynote)
+
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
  
−
*'''Applied Biosystems Inc., Science Meeting'''
+
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''  
−
**September, 2005, Asilomar, CA
+
*October 28, 2005, Buffalo, NY
−
**Michael Ashburner (Keynote)
+
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider
  
−
*'''MGED8, Bergen'''
+
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''  
−
**September, 2005
+
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)
−
**Michael Ashburner (Keynote)
+
*October 28, 2005, Buffalo, NY
 +
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]

Latest revision as of 11:59, 19 October 2018

NCBO-Sponsored Dissemination and Training Events 2005-2015

International Conference on Biomedical Ontology, Lisbon, July 27-30, 2015

The Role of Ontology in Big Cancer Data, National Cancer Institute, Bethesda, MD, May 12-13, 2015

Information Artifact Ontologies, Workshop organized as part of FOIS, Rio de Janeiro, Brazil, September 22, 2014

5th International Conference on Biomedical Ontologies (ICBO 2014), Houston, TX, October 6-9, 2014

Protein Ontology Workshop

  • Georgetown, DC, June 18-19, 2014

Tutorial on Ontology for Image Informatics

  • Buffalo, NY, June 23, 2014

Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop

  • Buffalo, NY, June 24-25, 2014.

NCBO Hackathon 2013

PRO-PO-GO Meeting: Challenges of Ontology Coordination Across Organisms

  • Buffalo, NY, May 15-16, 2013
  • The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.

Second CTSA Ontology Workshop

  • Orlando, FL, February 11-12, 2013
  • This is the second meeting of the new IKFC Clinical and Translational Science Ontology Affinity Group which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.

SWAT4LS2012 Tutorial

  • Paris, November 29, 2012

Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities

  • AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.

Overview Presentation for the NCBC Showcase

  • November 8-9, 2012

Course on Anatomy Ontologies

Bio-Ontologies 2012 Long Beach, CA July 13-14, 2012

  • NCBO Web services: Powering Semantically Aware Applications

International Conference on Biomedical Ontology, Graz, Austria, July 21-25, 2012.

Semantics of Biodiversity

Immunology Ontologies and Their Applications in Processing Clinical Data

  • Buffalo, NY, June 11-13, 2012.

CTSA Ontology Tutorial

  • Baltimore, MD, April 24, 2012.

Clinical and Translational Science Ontology Workshop

  • Baltimore, MD, April 25-26, 2012.

Introduction to Bio-Ontologies and Their Applications

  • Stanford University, CA, March 15, 2012.

AMIA CRI Demo

  • San Francisco, CA, March 22, 2012.

NCBO Hackathon

  • Stanford University, CA, March 26-27, 2012.

Introduction to Bio-Ontologies

  • New York Botanical Gardens, Bronx, NY, February 5, 2012.

SWAT4LS Tutorial: NCBO Web Services and Development of Semantic Applications

  • London, UK, December 7-9, 2011

DBCLS Hackathon

  • Kyoto, Japan, August 22-26, 2011

2nd International Conference on Biomedical Ontology ICBO ↑

  • Videos of all presentations and discussions are available here
  • Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.

How to Build a Biomedical Ontology ↑

The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research ↑

  • San Diego, CA, March 16-19, 2011.

Infectious Disease Ontology Dissemination Workshop ↑

  • Baltimore, MD, December 8-9, 2010.

Introduction to Ontology Building ↑

  • Tutorial, University at Buffalo, October 23, 2010.

Medinfo Workshop on Infectious Disease Ontology↑

  • September 9-15, 2010, Cape Town, South Africa,

W3C Workshop – RDF Next Steps↑

  • June 26-27, 2010, Stanford, CA.

Formal Ontology in Information Systems ↑

  • Toronto, Canada, May 11-14, 2010.

Ontology Summit 2010: Creating the Ontologists of the Future ↑

  • March 15-16, 2010, NIST, Gaithersburg, MD
  • Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
  • Communique

3rd Interdisciplinary Ontology Conference ↑

  • February 26-28, 2010, Keio University, Tokyo, Japan
  • Conference co-sponsored with the Japanese Center for Ontological Research
  • Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.

Ontologies for the Virtual Physiological Human ↑

  • February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK

The Future of the Foundational Model of Anatomy

From Aristotle to the Universal Core: Ontology Training Event ↑

  • October 10-11, 2009, Buffalo, NY
  • Co-sponsored with the University at Buffalo
  • Webcast

Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes ↑

  • September 3-4, 2009, University of Milan, Biccaca, Italy
  • NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
  • Follow-up from 2008 NCBO Clinical Phenotypes meeting

International Conference on Biomedical Ontology (ICBO) ↑

  • July 27-29, 2009, Buffalo, NY
  • Co-sponsored by the National Center for Ontological Research and the University at Buffalo
  • Proceedings

From Basic Formal Ontology to the Information Artifact Ontology ↑

  • July 25-26, 2009, Buffalo, NY
  • NCBO Tutorial co-located with the International Conference on Biomedical Ontology (ICBO); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
  • Webcast

International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy ↑

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
  • Co-organized with the Japanese Center for Ontological Research

Evolutionary Biology and Ontologies ↑

  • January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology (SICB)
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes ↑

How to Make Useful Ontologies for Biomedicine ↑

  • July 19, 2008, Toronto, Canada.
  • NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
  • Slides

Evolutionary Biology and Ontologies ↑

  • June 20, 2008, Minneapolis, MN
  • Held in conjunction with the Evolution 2008 meeting.
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

The Ontology of Relations ↑

  • May 19-20, 2008, Denver, CO
  • NCBO Dissemination Workshop

Introduction to Biomedical Ontologies ↑

  • April 12-13, 2008, Buffalo, NY
  • NCBO Tutorial (Faculty: Barry Smith)
  • Webcast

Ontologies of Cellular Networks ↑

  • March 27-28, 2008, Newark, NJ
  • NCBO Dissemination Workshop
  • Publication

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • February 26-27, 2008, Tokyo, Japan, organized in conjunction with InterOntologies 08
  • NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research

Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences ↑

  • July 23-27, 2007: Schloss Dagstuhl, Germany
  • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
  • Proceedings

Ontologies for Biomedicine – How to Make and Use Them ↑

  • July 21, 2007, Vienna, Austria
  • NCBO Tutorial at ISMB 2007 (Faculty: Nigam Shah and Barry Smith)

Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research ↑

Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More ↑

  • June 12-13th, 2007, University of Utah, Salt Lake City, UT

Clinical Trial Ontology ↑

  • May 16-17 2007, NIH Campus, Bethesda, MD
  • NCBO Dissemination Workshop
  • OCRe Ontology

Dagstuhl Seminar: Ontology Interoperability in Biomedicine ↑

  • March 27-30, 2007, Dagstuhl, Germany
  • NCBO Dissemination Workshop
  • Seminar Report

The OBO Foundry - A Gold Standard Approach to Ontology Evaluation ↑

Phenotype Ontology ↑ Announcement

  • December 1-2, 2006, Clark Center, Stanford, CA
  • NCBO Dissemination Workshop

Connecting BioPAX to Other Biomedical Ontologies

  • November 20-21, 2006, MIT, Boston, MA
  • NCBO Tutorial (Faculty: Barry Smith)

Panel on the Future of HL7 ↑

Genomics Knowledge Representation for Clinical Trials ↑

  • AMIA Annual Symposium, November 12, 2006, Washington DC
  • Tutorial (Faculty: Nigam Shah, Barry Smith, and others)

Biomedical Imaging Ontologies ↑

  • AMIA Annual Symposium, November 11, 2006, Washington DC,
  • Follow-Up Meeting to NCBO Dissemination Workshop on the Ontology of Images

Biomedical Ontology in Action ↑

  • November 8, 2006, Baltimore, MD
  • Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
  • Publication

Ontology of Diseases ↑

  • November 6-7, 2006, John Hopkins University, Baltimore
  • NCBO Dissemination Workshop organized in association with the FOIS 2006 (Formal Ontology and Information Systems) Conference

Ontology Development ↑

  • September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)

Anatomy Ontology Workshop ↑

Tutorial on Standards and Ontologies ↑

Ontologies for Biomedicine – How to Make and Use Them ↑

On the Need and Utility of Ontologies ↑"

  • Jul 30-August 4, 2006, Fortaleza, Brazil.
  • Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.

Functional Genomics Investigation Ontology (FuGO) 2nd Workshop ↑.

  • July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
  • This meeting led to creation of OBI Ontology for Biomedical Investigations;

Ontology Visualization with Jambalaya ↑

  • July 23-26, 2006, Stanford, CA
  • NCBO Tutorial (Faculty: Chris Callendar)

Scientific Ontologies: NCBC Special Interest Group Meeting ↑

  • July 17-19, 2006, NIH, Bethesda, MD
  • i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [1]

Ontology: A Vision for the Future and Its Realization ↑

Training Course in Biomedical Ontologies ↑

Phenotype Annotation Meeting ↑

  • May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
  • NCBO Dissemination Workshop

Principles of Biomedical Ontology Design ↑

The Ontology of Images ↑

  • March 24-25, 2006, Stanford, CA
  • NCBO Dissemination Workshop
  • Led to establishment of standards for BIRNLex Ontology
  • Webcast

Ontology Workshop: Focus on Immunology ↑

  • March 21-22, 2006, Gaitherburg, MD
  • Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
  • Publication; Ontology

Navigating the Translational Researcher Through a Complex of Animal and Biological Resources ↑

  • March 6-7, 2006, Bethesda, MD
  • Presentation by Monte Westerfield on Animal Models and Ontologies

BIRN ontology workshop Agenda

  • February 28-March 1, 2006, Stanford, CA
  • Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" Part 1 Part 2
  • NCBO Dissemination Workshop
  • Led to creation of BIRNLex ontology

Functional Genomics Investigation Ontology (FuGO): First Workshop ↑

International Biocurator Meeting ↑

  • December 8-11, 2005, Asilomar, CA
  • Attending: Sima Misra, Chris Mungall, Monte Westerfield

Phenotype Ontology Content Workshop ↑

  • Nov. 19-20, 2005, Cold Spring Harbor, NY
  • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield

Workshop on Bio-Ontologies ↑

  • October 28, 2005, Buffalo, NY
  • Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider

Making Ontologies Better ↑

  • NCBO Training Workshop (Faculty: David Hill and Barry Smith)
  • October 28, 2005, Buffalo, NY
  • Slides
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