Difference between revisions of "Meetings and Events"

Revision as of 10:44, 26 July 2006

Upcoming meetings

In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot
- Jul 30- August 4, 2006, Fortaleza, Brazil.
- http://www.swissprot20.org/
- Attending: Michael Ashburner, Suzanna Lewis

ISMB, 2006
- August 6-10, 2006, Fortaleza, Brazil.
- http://ismb2006.cbi.cnptia.embrapa.br/
- Attending: Michael Ashburner, Suzanna Lewis (Keynote speaker for Bio-ontologies SIG)

IEEE Computational Systems Bioinformatics, 2006
August 14-18, 2006. Stanford University
- http://www.lifesciencessociety.org/CSB2006/index.html
- Attending: Mark Musen (Keynote), rest of Stanford group (tutorial in bioontologies/semantic web)

Anatomy Ontology Workshop
- September 8-9, 2006, Seattle
- information on the Anatomy Ontology Workshop
- Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield

American Society of Human Genetics
- October 9-13, 2006, New Orleans, LA
- http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml
- Presentation to find collaborators, also ontology workshop

Fall NCBO Project Meeting
- Oct. 23-25, 2006, Stanford
- All Hands meeting
- Advisory Comm. & NIH Program & Science officers invited

Workshop on Ontology of Diseases
- In association with FOIS 2006 (Formal Ontology and Information Systems)
- November 6-7, 2006, John Hopkins University, Baltimore
- information on the Disease Ontology Workshop
- Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, Monte Westerfield

PATO meeting
- November 30-December 2, 2006, Stanford University Clark Center
- information about the PATO Meeting
- Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield

2007

Ontology Interoperability in Biomedicine
- March 27-30, 2007, Dagstuhl, Germany
- Invitation only

Workshop on Clinical Trial Ontology
- May 16-17 2007, venue TBD
- information about Clinical Trial Ontology workshop

Dagstuhl Seminarium: Ontologies and Text Mining for Life Sciences
- July 23-27, 2007: Dagstuhl, Germany
- Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
- Attending: Michael Ashburner
- http://www.dagstuhl.de/07301

Spatial reasoning over ontologies
- Fall 2007?

Ontology Training workshops for training workshops
- Aug. 2007?, Buffalo?

NECTAR Clinical Research Ontology Workshop
- 2007?, Bethesda?

All NCBCs Ontology workshop
- 2007? with Andreas Califano, Columbia, NY?

Phenotype Ontology (Upper Level) workshop
- 2007?

Past meetings

9th International Protege Conference
- July 23-26, 2006, Stanford, CA

NCBC All Hands Meeting
- July 17-19, 2006, NIH, Bethesda, MD
- Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield
- http://www.bisti.nih.gov/ahm2006/
- Ontology: A Vision for the Future and Its Realization Dissemination Event
  - Organizers: Mark Musen, Barry Smith

Core 1 & 2 Project Meeting
- June 27-28, 2006, Berkeley, CA
- Attending: Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute, Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
- Working plan for core 1 & 2 goals

Core 1 & 2 Meeting
- June 9, 2006, Berkeley, CA
- Attending: Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)

Training Course in Biomedical Ontologies
- http://ontology.buffalo.edu/06/os2/index.html
- May 21-24, 2006, Schloss Dagstuhl, Germany
- Attending: Werner Ceusters, Mark Musen, Barry Smith

NSF/RCN workshop on ontology and phylogeny
- May 21-24, St. Louis, MO
- Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield

Phenotype Annotation Meeting
- May 17-20, Hinxton, UK
- Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
- PATO meeting agenda

Fish Evolutionary Biology Working Group Meeting
- April 9-11, National Evolutionary Synthesis Center (NESCent), Durham, NC
- Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield

Gene Ontology Workshop
- March 31-April 3, 2006, St. Croix
- Attending: Michael Ashburner, Suzanna Lewis, Chris Mungall, Barry Smith

Bio-IT LifeSciences Conference
- April 3-6, 2006, Boston, MA
- http://www.lifesciencesexpo.com/live/26/
- Speaker: Michael Ashburner, Ben Franklin Award Lecture.

Workshop on Ontology of Images
- March 24-25, 2006, Stanford, CA
- CCB NCBC and others with biomedical image ontologies
- [Workshop on Ontology of Images | info on Ontology of Images workshop]
- Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar

Immunology Ontology Workshop: NIAID
- March 21-22, 2006, Gaitherburg, MD
- Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith

Semantic Technology Conference
- March 6-9, 2006, San Jose, CA
- http://www.semantic-conference.com/
- Attending: Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)

NIH NCRR Animal Models workshop
- March 6-7, 2006, Bethesda, MD
- Attending: Monte Westerfield

cBio Project Meeting
- March 2-4, 2006, Stanford, CA
- Agenda
- http://www.smi.stanford.edu/research/cbio/cbio_meeting.html
- Entire project, NIH Program & Lead Science officers

BIRN ontology workshop
- February 28-March 1, 2006, Stanford, CA
- Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith

NLM vocabulary collection and distribution meeting
- February 27-28, 2006, NLM, Washington, DC
- Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig

NIAID meeting
- February, 2006, Washington, DC
- Attending: Mark Musen

cBio Phenotype Annotation tool specification
- February 21-23, 2006, Berkeley, CA
- Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)

Mini-Syposium on Semantic Enrichment of Scientific Literature
- February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
- Attending: Michael Ashburner (speaker)

cBio OBD specification
- February 17, 2006, Berkeley, CA
- Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)

FuGO meeting
- February 13-15, 2006, Philadelphia, PA
- http://fugo.sourceforge.net/news/index.php
- Attending: Barry Smith

Fourth Semantic Interoperability for E-Government Conference
- February 9-10, 2006, MITRE, McLean, VA
- http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910
- Attending: Barry Smith

NIAID BRC3 and Inter Operability Working Group meeting
- February 6-7, 2006, Philadelphia, PA
- http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm
- Attending: Suzanna Lewis, Barry Smith

PharmGKB and cBiO meeting
- January 31, 2006, Stanford, CA
- Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)

Pacific Symposium on Biocomputing, 2006
- January 2-6, 2006, Maui, HI
- Michael Ashburner (Keynote)
- http://psb.stanford.edu/

NCBC Meeting
- Dec. 15-16, NIH, Bethesda, MD
- Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
- Introducting new NCBCs to each other and NIH staff

Phenotype Annotation Meeting
- December 11-12, 2005, Asilomar conference center
- Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
- Define requirements of phenotype annotation tools

International Biocurator Meeting
- December 8-11, 2005, Asilomar, CA
- http://biocurator.org/intnlbiocurator.html
- Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)

National Bioinformatics Network, South Africa
- December 2, 2005, University of Cape Town, SA
- Michael Ashburner (Keynote)

Phenotype Ontology Content Workshop
- Nov. 19-20, 2005, Cold Spring Harbor, NY
- Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
- Media:PhenoAgenda.doc

Stanford/Mayo/Berkeley Meetings
- Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
- Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam, (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)

Forbes Dewey Meeting
- Late October, MIT, Cambridge, MA
- Michael Ashburner, chair
- Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.

Genome Informatics Meeting
- Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
- Suzanna Lewis (organizer, speaker)

Workshop on Bio-Ontologies
- October 28, 2005, Buffalo, NY
- http://ontology.buffalo.edu/05/bio-ontologies.pdf
- Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
- Training session: making ontologies better

1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology
- October, 2005, Caxambu, Brazil
- Michael Ashburner (Keynote)

Applied Biosystems Inc., Science Meeting
- September, 2005, Asilomar, CA
- Michael Ashburner (Keynote)

MGED8, Bergen
- September, 2005
- Michael Ashburner (Keynote)

@@ Line 14: / Line 14: @@
 *August 14-18, 2006.  Stanford University
 **[http://www.lifesciencessociety.org/CSB2006/index.html http://www.lifesciencessociety.org/CSB2006/index.html]
-** Attending: Mark Musen (Keynote speaker), rest of Stanford group (tutorial in bioontologies/semantic web)
+** Attending: Mark Musen (Keynote), rest of Stanford group (tutorial in bioontologies/semantic web)
 *'''Anatomy Ontology Workshop'''
@@ Line 72: / Line 72: @@
 * '''Phenotype Ontology (Upper Level) workshop'''
-**?
+**2007?
 == Past meetings ==
+*'''9th International Protege Conference'''
+**July 23-26, 2006, Stanford, CA
 *'''NCBC All Hands Meeting'''
@@ Line 84: / Line 88: @@
 * '''Core 1 & 2 Project Meeting'''
-** June 27-28, 2006, Berkeley
+** June 27-28, 2006, Berkeley, CA
 ** Attending:  Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall,  ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute,  Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
 ** Working plan for core 1 & 2 goals
 * '''Core 1 & 2 Meeting'''
-** June 9, 2006, Berkeley
+** June 9, 2006, Berkeley, CA
 ** Attending:  Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)
@@ Line 98: / Line 102: @@
 *'''NSF/RCN workshop on ontology and phylogeny'''
-**May 21-24, St. Louis
+**May 21-24, St. Louis, MO
 **Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
@@ Line 120: / Line 124: @@
 *'''Workshop on Ontology of Images'''
-**March 24-25, 2006, Stanford University
+**March 24-25, 2006, Stanford, CA
 **[http://www.loni.ucla.edu/CCB/ CCB NCBC] and others with biomedical image ontologies
 **[Workshop on Ontology of Images | info on Ontology of Images workshop]
@@ Line 130: / Line 134: @@
 *'''Semantic Technology Conference'''
-**March 6-9, 2006, San Jose, California
+**March 6-9, 2006, San Jose, CA
 ** [http://www.semantic-conference.com/ http://www.semantic-conference.com/ ]
-** Attending:  Deborah McGuinness(keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar(speaker)
+** Attending:  Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)
 *'''NIH NCRR Animal Models workshop'''
@@ Line 139: / Line 143: @@
 *'''[[Minutes & presentations, March 2-4, 2006 Project meeting|cBio Project Meeting]]'''
-**March 2-4, 2006, Stanford University
+**March 2-4, 2006, Stanford, CA
 ** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
 **[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html http://www.smi.stanford.edu/research/cbio/cbio_meeting.html]
@@ Line 145: / Line 149: @@
 *'''BIRN ontology workshop'''
-**February 28-March 1, 2006, Stanford
+**February 28-March 1, 2006, Stanford, CA
 ** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
@@ Line 153: / Line 157: @@
 *'''NIAID meeting'''
-**February, 2006, DC
+**February, 2006, Washington, DC
 **Attending: Mark Musen
 *'''cBio Phenotype Annotation tool specification'''
-**February 21-23, 2006, LBNL
+**February 21-23, 2006, Berkeley, CA
 ** Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)
 *'''Mini-Syposium on Semantic Enrichment of Scientific Literature'''
-**February 20, 2006 at the European Bioinformatics Institute, Hinxton
+**February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
 **Attending: Michael Ashburner (speaker)
 *'''cBio OBD specification'''
-**February 17, 2006, LBNL
+**February 17, 2006, Berkeley, CA
-** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford-by phone)
+** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
 *'''FuGO meeting'''
-** February 13-15, 2006, Penn, Philadelphia, PA
+** February 13-15, 2006, Philadelphia, PA
 **[http://fugo.sourceforge.net/news/index.php  http://fugo.sourceforge.net/news/index.php]
 **Attending: Barry Smith
@@ Line 181: / Line 185: @@
 ** February 6-7, 2006,  Philadelphia, PA
 ** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm]
-** Attending: Suzi, Barry
+** Attending: Suzanna Lewis, Barry Smith
 *'''PharmGKB and cBiO meeting'''
-** January 31, 2006, Stanford
+** January 31, 2006, Stanford, CA
-** Attending: Daniel (Stanford), Suzi & Sima (Berkeley), Teri Klein, Tina Boussard, Mark Woon, Russ Altman (PharmGKB)
+** Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)
 *'''Pacific Symposium on Biocomputing, 2006'''
-**Maui, HI, January 2-6, 2006
+**January 2-6, 2006, Maui, HI
-**Michael Ashburner, Keynote.
+**Michael Ashburner (Keynote)
 **[http://psb.stanford.edu/ http://psb.stanford.edu/]
 *'''NCBC Meeting'''
-**Dec. 15-16, NIH
+**Dec. 15-16, NIH, Bethesda, MD
-**Attending: Mark, Suzi, Monte
+**Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
 **Introducting new NCBCs to each other and NIH staff
 *'''Phenotype Annotation Meeting'''
 **December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
-** Attending
+** Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
-*** From ZFIN: Monte Westerfield, Erik Segerdell, Melissa Haendel, Paula Mabee
-*** From FlyBase: Gillian Millburn
-*** From Berkeley: Suzi Lewis, Chris Mungall, Mark Gibson
-*** From Victoria: Peggy Storey, Chris Callendar, Sean Falconer
 ** Define requirements of phenotype annotation tools
 *'''International Biocurator Meeting'''
-**Asilomar, December 8-11, 2005
+**December 8-11, 2005, Asilomar, CA
 **[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
-**Attending: Monte Westerfield (speaker), Chris Mungall (speaker), Sima
+**Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)
 *'''National Bioinformatics Network, South Africa'''
-**December 2, 2005, University of Cape Town.
+**December 2, 2005, University of Cape Town, SA
-**Michael Ashburner, Keynote talk at Official Opening.
+**Michael Ashburner (Keynote)
 *'''Phenotype Ontology Content Workshop'''
-**Nov. 19-20, 2005, CSHL
+**Nov. 19-20, 2005, Cold Spring Harbor, NY
-** Attending
+** Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
-*** From cBio: Mark, Nigam, Suzi, Chris, John, Michael, George, Monte, Erik (not Barry)
-*** Jonathan Bard, XSPAN
-*** Thomas Bittner, Lou Goldberg, Fabian Neuhaus, NCOR
-*** Judy Blake, MGD
-*** Mike Cherry, Jane Lomax, GO
-*** Rex Chisolm, Pascale Gaudet, NuGene project
-*** Rachel Drysdale, FlyBase
-*** Akhilesh Pandey, OMIM
-*** Anne Kwitek, RGD
-*** Yves Lussier, SNOMED
 ** [[Media:PhenoAgenda.doc]]
 *'''Stanford/Mayo/Berkeley Meetings'''
-**Nov. 21, 10am-3pm, Stanford; Nov. 22, 10am-3pm, Berkeley
+**Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
-** Attending
+** Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam,  (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
-*** From Stanford: Mark, Daniel, Archana, Lynn, Nigam
-*** From Berkeley: Suzi, Chris, Sima, Shu, Nomi
-*** From Mayo: Deepak, Harold, Jim
 *'''Forbes Dewey Meeting'''
-**Late October, MIT
+**Late October, MIT, Cambridge, MA
 **Michael Ashburner, chair
 **Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
 *'''Genome Informatics Meeting'''
-**Oct. 28-Nov. 1, CSHL
+**Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
-**Suzi will gave presentation on cBio.
+**Suzanna Lewis (organizer, speaker)
-**Birds of a feather sessions, one on ontology.
 *'''Workshop on Bio-Ontologies'''
 **October 28, 2005, Buffalo, NY
 **[http://ontology.buffalo.edu/05/bio-ontologies.pdf http://ontology.buffalo.edu/05/bio-ontologies.pdf]
-**Presenting: Suzi, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
+**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
-**Training session on making ontologies better
+**Training session: making ontologies better
-*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology, Caxambu, Brazil'''
+*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
-**October, 2006
+**October, 2005, Caxambu, Brazil
-**Michael Ashburner, Keynote.
+**Michael Ashburner (Keynote)
-*'''Applied Biosystems Inc., Science Meeting, Asilomar'''
+*'''Applied Biosystems Inc., Science Meeting'''
-**September 2005
+**September,  2005, Asilomar, CA
-**Michael Ashburner, Keynote.
+**Michael Ashburner (Keynote)
 *'''MGED8, Bergen'''
 **September, 2005
-**Michael Ashburner, Keynote
+**Michael Ashburner (Keynote)

Difference between revisions of "Meetings and Events"

Revision as of 10:44, 26 July 2006

Upcoming meetings

Past meetings

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