Difference between revisions of "PATO Meeting"

Latest revision as of 09:58, 3 January 2007

General Information and Registration

The National Center for Biomedical Ontology will host a two-day meeting focused on the Phenotype and Trait Ontology (PATO) December 1-2, 2006 at Stanford University in Palo Alto, CA.

Register here.

Agenda

Media:Pheno_workshop_Dec2006.pdf

Minutes

Media: Updated Meeting Minutes

Presentations

Day 1 presentations

Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature Media:GullyBurns.ppt

Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt Media:AlexanderGarcia.ppt

Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing Media:Adrien Coulet.pdf

Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics Media:TinaHernandez.ppt

James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals Media:JamesReecy.ppt

Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research Media:VictoriaPetri.ppt

Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration Media:CarolBastiani.ppt

Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease Media:JananEppig.ppt

Rex Chisholm: Phenotype curation tool and ontologies at dictyBase Media:RexChisholm.ppt

Minna Lehvaslaiho: HIV Media:MinnaLehvaslaiho.ppt

Eurie Hong: Yeast Media:EurieHong.ppt

Tanya Berardini: Arabidopsis Media:TanyaBerardini.ppt

Christopher Smith: Insect behavior Media:ChristopherSmith.ppt

Michael Ashburner: Drosophila (live demo, no slides)

Maryann Martone: BIRN

Jim Balhoff: NESCENT Media:JimBalhoff.pdf

Day 2 presentations Chris Mungall Media:ChrisMungall.ppt

Monte Westerfield Media:MonteWesterfield.ppt

Venue

Stanford University Clark Center, room S360

Directions to Stanford Medical Center

Map of Stanford Medical Center--see "C", Clark Center

Directions on taking Free Marguerite Shuttle Bus--take Line A to Medical Center

Accommodations

We aren't reserving a block of rooms anywhere, but these local hotels are close by and have Stanford shuttle service.

@@ Line 1: / Line 1: @@
-== General Information ==
+== General Information and Registration ==
 The [http://ncbo.us National Center for Biomedical Ontology] will host a two-day meeting focused on the [http://obo.sourceforge.net/cgi-bin/detail.cgi?attribute_and_value Phenotype and Trait Ontology (PATO)] December 1-2, 2006 at Stanford University in Palo Alto, CA.
-==Draft agenda==
+[http://www.fruitfly.org/pato/pato-form.html Register here.]
-*Thursday, November 30, 2006
+==Agenda==
-** 7pm: Informal gathering for dinner (Gordon Biersch?)
+[[Media:Pheno_workshop_Dec2006.pdf]]
-*Friday, December 1, 2006
+==Minutes==
-**8:30 - 5:30pm Meeting
-***Introduction to PaTO
-***Phenote
-*Saturday, December 2, 2006
+[http://www.bioontology.org/wiki/images/c/c6/Updated_Meeting_Notes.pdf Media: Updated Meeting Minutes]
-**8:30 - 5:30pm Meeting
+==Presentations==
+'''Day 1 presentations'''
+Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature [[Media:GullyBurns.ppt]]
+Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt [[Media:AlexanderGarcia.ppt]]
+Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing [[Media:Adrien Coulet.pdf]]
+Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics [[Media:TinaHernandez.ppt]]
+James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals [[Media:JamesReecy.ppt]]
+Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research [[Media:VictoriaPetri.ppt]]
+Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration [[Media:CarolBastiani.ppt]]
+Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease [[Media:JananEppig.ppt]]
+Rex Chisholm: Phenotype curation tool and ontologies at dictyBase [[Media:RexChisholm.ppt]]
+Minna Lehvaslaiho: HIV [[Media:MinnaLehvaslaiho.ppt]]
+Eurie Hong: Yeast [[Media:EurieHong.ppt]]
+Tanya Berardini: Arabidopsis [[Media:TanyaBerardini.ppt]]
+Christopher Smith: Insect behavior [[Media:ChristopherSmith.ppt]]
+Michael Ashburner: Drosophila (live demo, no slides)
+Maryann Martone: BIRN
+Jim Balhoff: NESCENT [[Media:JimBalhoff.pdf]]
+'''Day 2 presentations'''
+Chris Mungall [[Media:ChrisMungall.ppt]]
+Monte Westerfield [[Media:MonteWesterfield.ppt]]
 ==Venue ==
@@ Line 20: / Line 58: @@
 [http://med.stanford.edu/maps/ Directions to Stanford Medical Center]
-[http://med.stanford.edu/maps/sumc.html Map of Stanford Medical Center]
+[http://med.stanford.edu/maps/sumc.html Map of Stanford Medical Center]--see "C",  Clark Center
-[http://transportation.stanford.edu/marguerite/MargueriteSched.shtml Directions on taking Free Marguerite Shuttle Bus--take Line A to Medical Center]
+[http://transportation.stanford.edu/marguerite/MargueriteSched.shtml Directions on taking Free Marguerite Shuttle Bus]--take Line A to Medical Center
 ==Accommodations==
@@ Line 32: / Line 70: @@
 *[http://woodsidehotels.com/stanford/index.html Stanford Park Hotel]
 *[http://www.starwoodhotels.com/sheraton/property/overview/index.html?propertyID=214 Sheraton]
+*[http://www.stanford.edu/dept/hds/SLAC/ SLAC Guest House]