Difference between revisions of "DRAFT AGENDA"
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* 9:00am Registration and Continental Breakfast | * 9:00am Registration and Continental Breakfast | ||
| − | * | + | * 9:30am Participant Self-Introductions |
| − | * 10:00am | + | * 10:00am '''Session 1 - Biology of Pathways and Networks (Moderator: Yves Lussier)''' |
| − | |||
| − | |||
| − | + | :Potential presenters: | |
| + | ::Fiona Brinkman | ||
| + | ::Nancy Gough | ||
| + | ::Yves Lussier | ||
| + | ::Chris Sander | ||
| + | ::Stuart Sealfon | ||
| − | + | :Potential topics: | |
| − | + | ::signalling pathways, metabolic pathways, ... | |
| − | * | + | ::regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...) |
| + | ::types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...) | ||
| + | ::granularity (molecular, cellular, physiological) ... | ||
| + | ::cellular networks and their surroundings: tissues, the extracellular matrix, and cell-environment interactions | ||
| + | * 11:00am Refreshment Break | ||
| + | * 11:15am | ||
| − | * | + | * 12:30pm Lunch Break |
| − | : | + | * 1:30pm '''Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Alan Ruttenberg) |
| − | |||
| − | |||
| − | |||
| − | + | :Potential presenters: | |
| + | ::Peter Lyster | ||
| + | ::Avi Ma'ayan | ||
| + | ::Andre Rhzetsky | ||
| + | ::Oliver Ruebenacker | ||
| + | ::Richard Scheuermann | ||
| + | ::Andrea Splendiani | ||
| − | * 3:30pm '''Session | + | * 3:30pm Refreshment Break |
| + | * 3:45pm '''Session 3 - Introduction to Ontology (Moderator: Barry Smith)''' | ||
| − | :: | + | :Potential presenters |
| + | ::Lindsay Cowell | ||
| + | ::Barry Smith | ||
| + | ::J. L. E. Mejino Jr. | ||
* 5:00pm End of Day 1 | * 5:00pm End of Day 1 | ||
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* 8:30am Continental Breakfast | * 8:30am Continental Breakfast | ||
| − | * 9:00am Session | + | * 9:00am Session 4: '''Current Approaches to Pathway and Network Ontology (Moderator: Richard Scheuermann)''' |
| − | + | :Potential presenters: | |
| − | : | + | ::Bill Bug |
| − | : | + | ::Peter d'Eustachio: Reactome |
| − | + | ::Ken Fukuda: INOH Pathway Database | |
| − | :: | + | ::Darren Natale: Protein Ontology |
| + | ::Balaji S. Srinivasan | ||
* 10:45am Refreshment Break | * 10:45am Refreshment Break | ||
| + | * 11:00am | ||
| + | * 12.30pm Lunch Break | ||
| − | * | + | * 1:30 '''Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)''' |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | : | + | :Open discussion; presenters and topics to be decided |
| − | ::: | + | ::(example:) Approaches to extending the OBO Foundry to include pathway and network ontologies |
* 4:00pm End of Day 2 | * 4:00pm End of Day 2 | ||
Latest revision as of 11:15, 4 February 2008
Preliminary Agenda
Thursday, March 27, 2008
- 9:00am Registration and Continental Breakfast
- 9:30am Participant Self-Introductions
- 10:00am Session 1 - Biology of Pathways and Networks (Moderator: Yves Lussier)
- Potential presenters:
- Fiona Brinkman
- Nancy Gough
- Yves Lussier
- Chris Sander
- Stuart Sealfon
- Potential topics:
- signalling pathways, metabolic pathways, ...
- regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
- types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
- granularity (molecular, cellular, physiological) ...
- cellular networks and their surroundings: tissues, the extracellular matrix, and cell-environment interactions
- 11:00am Refreshment Break
- 11:15am
- 12:30pm Lunch Break
- 1:30pm Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Alan Ruttenberg)
- Potential presenters:
- Peter Lyster
- Avi Ma'ayan
- Andre Rhzetsky
- Oliver Ruebenacker
- Richard Scheuermann
- Andrea Splendiani
- 3:30pm Refreshment Break
- 3:45pm Session 3 - Introduction to Ontology (Moderator: Barry Smith)
- Potential presenters
- Lindsay Cowell
- Barry Smith
- J. L. E. Mejino Jr.
- 5:00pm End of Day 1
Friday, March 28, 2008
- 8:30am Continental Breakfast
- 9:00am Session 4: Current Approaches to Pathway and Network Ontology (Moderator: Richard Scheuermann)
- Potential presenters:
- Bill Bug
- Peter d'Eustachio: Reactome
- Ken Fukuda: INOH Pathway Database
- Darren Natale: Protein Ontology
- Balaji S. Srinivasan
- 10:45am Refreshment Break
- 11:00am
- 12.30pm Lunch Break
- 1:30 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)
- Open discussion; presenters and topics to be decided
- (example:) Approaches to extending the OBO Foundry to include pathway and network ontologies
- 4:00pm End of Day 2