Difference between revisions of "Meetings and Events"

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'''NCBO''' = NCBO-sponsored dissemination/training event
 
'''NCBO''' = NCBO-sponsored dissemination/training event
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:*'''[http://groups.google.com/group/fma-owl-2009/web/agenda?hl=en The Future of the Foundational Model of Anatomy]''', Stanford, CA, November 11-12, 2009
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:*'''[http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 From Aristotle to the Universal Core]: Ontology Training Event, Buffalo, NY, October 10-11, 2009
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:*'''[http://bimib.disco.unimib.it/index.php/SSFW09 Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes]
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**September 3-4, 2009
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**Milan, Italy
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:*'''[[ICBO | International Conference on Biomedical Ontology (ICBO)]]''', Buffalo, NY, July 27-29, 2009
  
 
*'''[http://ontology.buffalo.edu/ncbo/pain.pdf International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy],  
 
*'''[http://ontology.buffalo.edu/ncbo/pain.pdf International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy],  
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**Feb 27-Mar 1, 2009
 
**Feb 27-Mar 1, 2009
 
**Tokyo, Japan
 
**Tokyo, Japan
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''[[Evolutionary Biology and Ontologies 2009 | Evolutionary Biology and Ontologies]]'''  
 
*'''[[Evolutionary Biology and Ontologies 2009 | Evolutionary Biology and Ontologies]]'''  
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**September 3-4, 2008
 
**September 3-4, 2008
 
**Dallas, TX
 
**Dallas, TX
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''[[How_to_Make_Useful_Ontologies_for_Biomedicine | How to Make Useful Ontologies for Biomedicine]]'''
 
*'''[[How_to_Make_Useful_Ontologies_for_Biomedicine | How to Make Useful Ontologies for Biomedicine]]'''
 
**July 19, 2008
 
**July 19, 2008
 
** Tutorial at ISMB 2008, Toronto, Canada.
 
** Tutorial at ISMB 2008, Toronto, Canada.
−
**'''NCBO'''
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***'''NCBO'''
  
 
*'''[[Evolutionary_Biology_and_Ontologies | Evolutionary Biology and Ontologies]]'''
 
*'''[[Evolutionary_Biology_and_Ontologies | Evolutionary Biology and Ontologies]]'''
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**April 12-13, 2008
 
**April 12-13, 2008
 
**2-Day Training Event, Buffalo, NY
 
**2-Day Training Event, Buffalo, NY
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''[[Networks | Workshop on Ontologies of Cellular Networks]]'''  
 
*'''[[Networks | Workshop on Ontologies of Cellular Networks]]'''  
 
**March 27-28, 2008
 
**March 27-28, 2008
 
**Newark, NJ
 
**Newark, NJ
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''[[JCOR | Joint JCOR-NCBO International Biomedical Ontology Dissemination Workshop]]'''
 
*'''[[JCOR | Joint JCOR-NCBO International Biomedical Ontology Dissemination Workshop]]'''
 
**February 26-27, 2008
 
**February 26-27, 2008
 
**Tokyo, Japan
 
**Tokyo, Japan
−
**'''NCBO'''
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***'''NCBO'''
  
 
*'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences'''
 
*'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences'''
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**July 21, 2007
 
**July 21, 2007
 
**Tutorial by Barry Smith and Nigam Shah at ISMB 2007
 
**Tutorial by Barry Smith and Nigam Shah at ISMB 2007
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''[http://cbms07.biomap.org/ Ontologies for Biomedical Systems II at 20th IEEE CBMS 2007]'''
 
*'''[http://cbms07.biomap.org/ Ontologies for Biomedical Systems II at 20th IEEE CBMS 2007]'''
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**May 16-17 2007, venue TBD
 
**May 16-17 2007, venue TBD
 
**[[Workshop on Clinical Trial Ontology | information about Clinical Trial Ontology workshop]]
 
**[[Workshop on Clinical Trial Ontology | information about Clinical Trial Ontology workshop]]
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''[http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 Dagstuhl Seminar: Ontology Interoperability in Biomedicine]'''
 
*'''[http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 Dagstuhl Seminar: Ontology Interoperability in Biomedicine]'''
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**Attending: Barry Smith, Michael Ashburner, Mark Musen, Nigam Shah, Fabian Neuhaus, Suzanna Lewis, Werner Ceusters
 
**Attending: Barry Smith, Michael Ashburner, Mark Musen, Nigam Shah, Fabian Neuhaus, Suzanna Lewis, Werner Ceusters
 
**Invitation only
 
**Invitation only
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''Ontolog Forum Talk''' by Barry Smith on [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 Ontology Evaluation in Biomedicine]: The OBO Foundry -- A Gold Standard Approach to Ontology Evaluation.
 
*'''Ontolog Forum Talk''' by Barry Smith on [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 Ontology Evaluation in Biomedicine]: The OBO Foundry -- A Gold Standard Approach to Ontology Evaluation.
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**[[PATO_Meeting| PATO meeting agenda]]
 
**[[PATO_Meeting| PATO meeting agenda]]
 
**Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
 
**Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''BioPAX Tutorial. [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation exploratory workshop and tutorial]''' on '''Connecting BioPAX to Other Biomedical Ontologies'''
 
*'''BioPAX Tutorial. [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation exploratory workshop and tutorial]''' on '''Connecting BioPAX to Other Biomedical Ontologies'''
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**http://ontology.buffalo.edu/06/pob  
 
**http://ontology.buffalo.edu/06/pob  
 
**Attending: Werner Ceusters, Barry Smith
 
**Attending: Werner Ceusters, Barry Smith
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''American Society of Human Genetics'''
 
*'''American Society of Human Genetics'''
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**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
 
**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
 
**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield     
 
**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield     
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''Tutorial on Standards and Ontologies
 
*'''Tutorial on Standards and Ontologies
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**May 21-24, 2006, Schloss Dagstuhl, Germany
 
**May 21-24, 2006, Schloss Dagstuhl, Germany
 
**Attending: Werner Ceusters, Mark Musen, Barry Smith
 
**Attending: Werner Ceusters, Mark Musen, Barry Smith
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''NSF/RCN workshop on ontology and phylogeny'''
 
*'''NSF/RCN workshop on ontology and phylogeny'''
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**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
 
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''Immunology Ontology Workshop:  NIAID'''
 
*'''Immunology Ontology Workshop:  NIAID'''
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**February 28-March 1, 2006, Stanford, CA
 
**February 28-March 1, 2006, Stanford, CA
 
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
 
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''NLM vocabulary collection and distribution meeting'''
 
*'''NLM vocabulary collection and distribution meeting'''
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**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
**Training session: making ontologies better
 
**Training session: making ontologies better
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**'''NCBO'''
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***'''NCBO'''
  
 
*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
 
*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''

Revision as of 09:08, 24 December 2009

Upcoming meetings

Please see NCBO Events Page for Upcoming events and meetings


Past meetings

NCBO = NCBO-sponsored dissemination/training event

    • September 3-4, 2009
    • Milan, Italy
  • Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences
    • July 23-27, 2007: Schloss Dagstuhl, Germany
    • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
    • Attending: Michael Ashburner
    • http://www.dagstuhl.de/07301
  • Phenotype Ontology (Workshop)
    • December 1-2, 2006, Clark Center, Stanford, CA
    • PATO meeting agenda
    • Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
      • NCBO
  • Workshop on Ontology of Diseases
    • In association with FOIS 2006 (Formal Ontology and Information Systems)
    • November 6-7, 2006, John Hopkins University, Baltimore
    • information on the Disease Ontology Workshop
    • Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, Monte Westerfield
    • NCBO
  • Fall NCBO Project Meeting
    • Oct. 23-25, 2006, Stanford
    • All Hands meeting
    • Advisory Committee & NIH Program & Science officers invited
  • Anatomy Ontology Workshop
    • September 8-9, 2006, Seattle
    • information on the Anatomy Ontology Workshop
    • Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield
      • NCBO
  • In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot
  • 9th International Protege Conference
    • July 23-26, 2006, Stanford, CA
    • http://protege.stanford.edu/conference/2006/
    • Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar
  • NCBC All Hands Meeting
  • Core 1 & 2 Project Meeting
    • June 27-28, 2006, Berkeley, CA
    • Attending: Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute, Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
    • Working plan for core 1 & 2 goals
  • Core 1 & 2 Meeting
    • June 9, 2006, Berkeley, CA
    • Attending: Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)
  • NSF/RCN workshop on ontology and phylogeny
    • May 21-24, 2006, St. Louis, MO
    • Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
  • Phenotype Annotation Meeting
    • May 17-20, 2006, Hinxton, UK
    • Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
    • PATO meeting agenda
  • Fish Evolutionary Biology Working Group Meeting
    • April 9-11, 2006, National Evolutionary Synthesis Center (NESCent), Durham, NC
    • Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield
  • Gene Ontology Workshop
    • March 31-April 3, 2006, St. Croix
    • Attending: Michael Ashburner, Suzanna Lewis, Chris Mungall, Barry Smith
  • Workshop on Ontology of Images
    • March 24-25, 2006, Stanford, CA
    • CCB NCBC and others with biomedical image ontologies
    • [Workshop on Ontology of Images | info on Ontology of Images workshop]
    • Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
      • NCBO
  • Immunology Ontology Workshop: NIAID
    • March 21-22, 2006, Gaitherburg, MD
    • Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
  • Semantic Technology Conference
    • March 6-9, 2006, San Jose, CA
    • http://www.semantic-conference.com/
    • Attending: Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)
  • NIH NCRR Animal Models workshop
    • March 6-7, 2006, Bethesda, MD
    • Attending: Monte Westerfield
  • BIRN ontology workshop
    • February 28-March 1, 2006, Stanford, CA
    • Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
      • NCBO
  • NLM vocabulary collection and distribution meeting
    • February 27-28, 2006, NLM, Washington, DC
    • Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig
  • NIAID meeting
    • February, 2006, Washington, DC
    • Attending: Mark Musen
  • cBio Phenotype Annotation tool specification
    • February 21-23, 2006, Berkeley, CA
    • Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)
  • Mini-Syposium on Semantic Enrichment of Scientific Literature
    • February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
    • Attending: Michael Ashburner (speaker)
  • cBio OBD specification
    • February 17, 2006, Berkeley, CA
    • Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
  • PharmGKB and cBiO meeting
    • January 31, 2006, Stanford, CA
    • Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)
  • Pacific Symposium on Biocomputing, 2006
  • NCBC Meeting
    • Dec. 15-16, NIH, Bethesda, MD
    • Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
    • Introducting new NCBCs to each other and NIH staff
  • Phenotype Annotation Meeting
    • December 11-12, 2005, Asilomar conference center
    • Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
    • Define requirements of phenotype annotation tools
  • National Bioinformatics Network, South Africa
    • December 2, 2005, University of Cape Town, SA
    • Michael Ashburner (Keynote)
  • Phenotype Ontology Content Workshop
    • Nov. 19-20, 2005, Cold Spring Harbor, NY
    • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
    • Media:PhenoAgenda.doc
  • Stanford/Mayo/Berkeley Meetings
    • Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
    • Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam, (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
  • Forbes Dewey Meeting
    • Late October, MIT, Cambridge, MA
    • Michael Ashburner, chair
    • Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
  • Genome Informatics Meeting
    • Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
    • Suzanna Lewis (organizer, speaker)
  • 1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology
    • October, 2005, Caxambu, Brazil
    • Michael Ashburner (Keynote)
  • Applied Biosystems Inc., Science Meeting
    • September, 2005, Asilomar, CA
    • Michael Ashburner (Keynote)
  • MGED8, Bergen
    • September, 2005
    • Michael Ashburner (Keynote)
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