Difference between revisions of "Meetings and Events"

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*Special session on Biomedical Ontologies co-organized with the Japanese Center for Ontological Research  
 
*Special session on Biomedical Ontologies co-organized with the Japanese Center for Ontological Research  
  
−
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]]'''  
+
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]'''  
 
*January 5, 2009, Boston, MA  
 
*January 5, 2009, Boston, MA  
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
  
−
<span style="background:#ffff00">'''[[DallasWorkshop | Workshop on Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes]]</span>'''
+
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''
 
*September 3-4, 2008, Dallas, TX
 
*September 3-4, 2008, Dallas, TX
 +
*'''NCBO Dissemination Workshop'''
  
 
'''[[How_to_Make_Useful_Ontologies_for_Biomedicine | How to Make Useful Ontologies for Biomedicine]]'''
 
'''[[How_to_Make_Useful_Ontologies_for_Biomedicine | How to Make Useful Ontologies for Biomedicine]]'''
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**June 20-23, 2007: Schloss Dagstuhl, Germany  
 
**June 20-23, 2007: Schloss Dagstuhl, Germany  
 
**Attending: Deborah McGuinness, Fabian Neuhaus, Nigam Shah, Barry Smith.
 
**Attending: Deborah McGuinness, Fabian Neuhaus, Nigam Shah, Barry Smith.
 +
*'''NCBO Dissemination Workshop'''
  
 
***[http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑] Training Course on Logical and Computational Tools for Biomedical Ontology Development, Schloss Dagstuhl, Germany.]
 
***[http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑] Training Course on Logical and Computational Tools for Biomedical Ontology Development, Schloss Dagstuhl, Germany.]
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**May 16-17 2007, venue TBD
 
**May 16-17 2007, venue TBD
 
**[[Workshop on Clinical Trial Ontology | Information about Clinical Trial Ontology workshop]]
 
**[[Workshop on Clinical Trial Ontology | Information about Clinical Trial Ontology workshop]]
−
***'''NCBO'''
+
*'''NCBO Dissemination Workshop'''
  
 
'''[http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑] Dagstuhl Seminar: Ontology Interoperability in Biomedicine]'''
 
'''[http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑] Dagstuhl Seminar: Ontology Interoperability in Biomedicine]'''
 
**March 27-30, 2007, Dagstuhl, Germany
 
**March 27-30, 2007, Dagstuhl, Germany
 
**Attending: Barry Smith, Michael Ashburner, Mark Musen, Nigam Shah, Fabian Neuhaus, Suzanna Lewis, Werner Ceusters
 
**Attending: Barry Smith, Michael Ashburner, Mark Musen, Nigam Shah, Fabian Neuhaus, Suzanna Lewis, Werner Ceusters
−
**Invitation only
+
*'''NCBO Dissemination Workshop'''
−
***'''NCBO'''
 
  
 
'''Ontolog Forum Talk''' by Barry Smith on [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] Ontology Evaluation in Biomedicine]: The OBO Foundry -- A Gold Standard Approach to Ontology Evaluation.
 
'''Ontolog Forum Talk''' by Barry Smith on [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] Ontology Evaluation in Biomedicine]: The OBO Foundry -- A Gold Standard Approach to Ontology Evaluation.
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**[[PATO_Meeting| PATO meeting agenda]]
 
**[[PATO_Meeting| PATO meeting agenda]]
 
**Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
 
**Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
−
***'''NCBO'''
+
*'''NCBO Dissemination Workshop'''
  
 
'''BioPAX Tutorial. [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ↑] exploratory workshop and tutorial]''' on '''Connecting BioPAX to Other Biomedical Ontologies'''
 
'''BioPAX Tutorial. [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ↑] exploratory workshop and tutorial]''' on '''Connecting BioPAX to Other Biomedical Ontologies'''
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**AMIA Annual Symposium
 
**AMIA Annual Symposium
 
**November 12, 2006, Washington DC
 
**November 12, 2006, Washington DC
−
**
 
  
 
'''[http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑] Biomedical Imaging Ontologies]'''
 
'''[http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑] Biomedical Imaging Ontologies]'''
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**[[Workshop on Ontology of Diseases | information on the Disease Ontology Workshop]]
 
**[[Workshop on Ontology of Diseases | information on the Disease Ontology Workshop]]
 
**Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith,  Monte Westerfield
 
**Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith,  Monte Westerfield
−
**'''NCBO'''
+
*'''NCBO Dissemination Workshop'''
  
 
'''Fall NCBO Project Meeting'''
 
'''Fall NCBO Project Meeting'''
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**http://ontology.buffalo.edu/06/pob  
 
**http://ontology.buffalo.edu/06/pob  
 
**Attending: Werner Ceusters, Barry Smith
 
**Attending: Werner Ceusters, Barry Smith
−
***'''NCBO'''
+
*'''NCBO Dissemination Workshop'''
  
 
'''American Society of Human Genetics'''
 
'''American Society of Human Genetics'''
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**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
 
**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
 
**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield     
 
**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield     
−
***'''NCBO'''
+
*'''NCBO Dissemination Workshop'''
  
 
'''Tutorial on Standards and Ontologies
 
'''Tutorial on Standards and Ontologies
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** Attending: Michael Ashburner, Suzanna Lewis
 
** Attending: Michael Ashburner, Suzanna Lewis
  
−
'''Functional Genomics investigation Ontology (FuGO) 2nd Workshop'''
+
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop'''
 
**July 24-28, 2006, Hinxton, UK
 
**July 24-28, 2006, Hinxton, UK
 
**http://fugo.sourceforge.net/news/index.php
 
**http://fugo.sourceforge.net/news/index.php
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'''Gene Ontology Workshop'''
 
'''Gene Ontology Workshop'''
 
**March 31-April 3, 2006, St. Croix
 
**March 31-April 3, 2006, St. Croix
−
** Attending: Michael Ashburner, Suzanna Lewis, Chris Mungall, Barry Smith
+
**Tutorial by Barry Smith
  
 
'''Bio-IT LifeSciences Conference'''
 
'''Bio-IT LifeSciences Conference'''
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**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
 
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
−
***'''NCBO'''
+
*'''NCBO Dissemination Workshop'''
  
−
'''Immunology Ontology Workshop: NIAID'''
+
'''Immunology Ontology Workshop: NIAID'''
 
**March 21-22, 2006, Gaitherburg, MD
 
**March 21-22, 2006, Gaitherburg, MD
 
** Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
 
** Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
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**February 28-March 1, 2006, Stanford, CA
 
**February 28-March 1, 2006, Stanford, CA
 
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
 
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
−
***'''NCBO'''
+
*'''NCBO Dissemination Workshop'''
  
 
'''NLM vocabulary collection and distribution meeting'''
 
'''NLM vocabulary collection and distribution meeting'''

Revision as of 08:26, 25 December 2009

NCBO and NCBO-Sponsored Dissemination and Training Events 2005-2009

The Future of the Foundational Model of Anatomy ↑

  • NCBO Dissemination Workshop
  • November 11-12, 2009, Stanford, CA

From Aristotle to the Universal Core: Ontology Training Event ↑

  • October 10-11, 2009, Buffalo, NY
  • Co-sponsored with the University at Buffalo

Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes ↑

  • September 3-4, 2009, University of Milan, Biccaca, Italy
  • Co-sponsored by the Italian National Research Council

International Conference on Biomedical Ontology (ICBO) ↑

  • July 27-29, 2009, Buffalo, NY
  • Co-sponsored by the National Center for Ontological Research and the University at Buffalo

International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy ↑

  • Mar 30-Apr 1, 2009, Miami, FL
  • Co-sponsored by the International Association for Dental Research

InterOntology 2009 ↑

  • Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan
  • Special session on Biomedical Ontologies co-organized with the Japanese Center for Ontological Research

Evolutionary Biology and Ontologies ↑

  • January 5, 2009, Boston, MA
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)

Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes ↑

  • September 3-4, 2008, Dallas, TX
  • NCBO Dissemination Workshop

How to Make Useful Ontologies for Biomedicine

    • July 19, 2008
    • Tutorial at ISMB 2008, Toronto, Canada.

Evolutionary Biology and Ontologies ↑

  • June 20, 2008, Minneapolis, MN
  • Held in conjunction with the ↑ Evolution 2008 meeting.
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)

Introduction to Biomedical Ontologies

  • April 12-13, 2008, 2-Day Training Event, Buffalo, NY

Workshop on Ontologies of Cellular Networks

  • March 27-28, 2008, Newark, NJ

Joint JCOR-NCBO International Biomedical Ontology Dissemination Workshop

  • February 26-27, 2008, Tokyo, Japan
  • Special session on Biomedical Ontologies co-sponsored with the Japanese Center for Ontological Research

Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences

    • July 23-27, 2007: Schloss Dagstuhl, Germany
    • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
    • Attending: Michael Ashburner
    • http://www.dagstuhl.de/07301

Ontologies for Biomedicine – How to make and use them

    • July 21, 2007
    • Tutorial by Barry Smith and Nigam Shah at ISMB 2007
      • NCBO

↑ Ontologies for Biomedical Systems II at 20th IEEE CBMS 2007]

    • June 20-22, 2007, Maribor, Slovenia

Reasoning with Biomedical Ontologies [ ↑]

    • June 20-23, 2007: Schloss Dagstuhl, Germany
    • Attending: Deborah McGuinness, Fabian Neuhaus, Nigam Shah, Barry Smith.
  • NCBO Dissemination Workshop
      • ↑ Training Course on Logical and Computational Tools for Biomedical Ontology Development, Schloss Dagstuhl, Germany.]
      • ↑ Powerpoint Slides]

Workshop on Clinical Trial Ontology

↑ Dagstuhl Seminar: Ontology Interoperability in Biomedicine]

    • March 27-30, 2007, Dagstuhl, Germany
    • Attending: Barry Smith, Michael Ashburner, Mark Musen, Nigam Shah, Fabian Neuhaus, Suzanna Lewis, Werner Ceusters
  • NCBO Dissemination Workshop

Ontolog Forum Talk by Barry Smith on ↑ Ontology Evaluation in Biomedicine]: The OBO Foundry -- A Gold Standard Approach to Ontology Evaluation.

Phenotype Ontology (Workshop)

    • December 1-2, 2006, Clark Center, Stanford, CA
    • PATO meeting agenda
    • Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
  • NCBO Dissemination Workshop

BioPAX Tutorial. ↑ exploratory workshop and tutorial] on Connecting BioPAX to Other Biomedical Ontologies

    • November 20-21, 2006
    • MIT

Panel on the Future of HL7

Tutorial on Genomics Knowledge Representation for Clinical Trials ↑

    • AMIA Annual Symposium
    • November 12, 2006, Washington DC

↑ Biomedical Imaging Ontologies]

    • November 11, 2006
    • AMIA, Washington DC

Biomedical Ontology in Action

Workshop on Ontology of Diseases

    • In association with FOIS 2006 (Formal Ontology and Information Systems)
    • November 6-7, 2006, John Hopkins University, Baltimore
    • information on the Disease Ontology Workshop
    • Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, Monte Westerfield
  • NCBO Dissemination Workshop

Fall NCBO Project Meeting

    • Oct. 23-25, 2006, Stanford
    • All Hands meeting
    • Advisory Committee & NIH Program & Science officers invited

Workshop on Philosophy of Biology

American Society of Human Genetics

Genomics Standards Consortium Workshop

Anatomy Ontology Workshop

    • September 8-9, 2006, Seattle
    • information on the Anatomy Ontology Workshop
    • Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield
  • NCBO Dissemination Workshop

Tutorial on Standards and Ontologies

IEEE Computational Systems Bioinformatics, 2006

ISMB, 2006

In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot

Functional Genomics Investigation Ontology (FuGO) 2nd Workshop

9th International Protege Conference

    • July 23-26, 2006, Stanford, CA
    • http://protege.stanford.edu/conference/2006/
    • Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar

NCBC All Hands Meeting

Core 1 & 2 Project Meeting

    • June 27-28, 2006, Berkeley, CA
    • Attending: Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute, Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
    • Working plan for core 1 & 2 goals

Core 1 & 2 Meeting

    • June 9, 2006, Berkeley, CA
    • Attending: Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)

Training Course in Biomedical Ontologies

NSF/RCN workshop on ontology and phylogeny

    • May 21-24, 2006, St. Louis, MO
    • Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield

Phenotype Annotation Meeting

    • May 17-20, 2006, Hinxton, UK
    • Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
    • PATO meeting agenda

Fish Evolutionary Biology Working Group Meeting

    • April 9-11, 2006, National Evolutionary Synthesis Center (NESCent), Durham, NC
    • Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield

Gene Ontology Workshop

    • March 31-April 3, 2006, St. Croix
    • Tutorial by Barry Smith

Bio-IT LifeSciences Conference

Workshop on Ontology of Images

    • March 24-25, 2006, Stanford, CA
    • CCB NCBC and others with biomedical image ontologies
    • [Workshop on Ontology of Images | info on Ontology of Images workshop]
    • Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
  • NCBO Dissemination Workshop

Immunology Ontology Workshop: NIAID

    • March 21-22, 2006, Gaitherburg, MD
    • Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith

Semantic Technology Conference

    • March 6-9, 2006, San Jose, CA
    • http://www.semantic-conference.com/
    • Attending: Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)

NIH NCRR Animal Models workshop

    • March 6-7, 2006, Bethesda, MD
    • Attending: Monte Westerfield

cBio Project Meeting

BIRN ontology workshop

    • February 28-March 1, 2006, Stanford, CA
    • Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
  • NCBO Dissemination Workshop

NLM vocabulary collection and distribution meeting

    • February 27-28, 2006, NLM, Washington, DC
    • Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig

NIAID meeting

    • February, 2006, Washington, DC
    • Attending: Mark Musen

cBio Phenotype Annotation tool specification

    • February 21-23, 2006, Berkeley, CA
    • Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)

Mini-Syposium on Semantic Enrichment of Scientific Literature

    • February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
    • Attending: Michael Ashburner (speaker)

cBio OBD specification

    • February 17, 2006, Berkeley, CA
    • Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)

FuGO meeting

Fourth Semantic Interoperability for E-Government Conference

NIAID BRC3 and Inter Operability Working Group meeting

PharmGKB and cBiO meeting

    • January 31, 2006, Stanford, CA
    • Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)

Pacific Symposium on Biocomputing, 2006

NCBC Meeting

    • Dec. 15-16, NIH, Bethesda, MD
    • Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
    • Introducting new NCBCs to each other and NIH staff

Phenotype Annotation Meeting

    • December 11-12, 2005, Asilomar conference center
    • Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
    • Define requirements of phenotype annotation tools

International Biocurator Meeting

National Bioinformatics Network, South Africa

    • December 2, 2005, University of Cape Town, SA
    • Michael Ashburner (Keynote)

Phenotype Ontology Content Workshop

    • Nov. 19-20, 2005, Cold Spring Harbor, NY
    • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
    • Media:PhenoAgenda.doc

Stanford/Mayo/Berkeley Meetings

    • Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
    • Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam, (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)

Forbes Dewey Meeting

    • Late October, MIT, Cambridge, MA
    • Michael Ashburner, chair
    • Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.

Genome Informatics Meeting

    • Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
    • Suzanna Lewis (organizer, speaker)

Workshop on Bio-Ontologies

    • October 28, 2005, Buffalo, NY
    • [1]
    • Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
    • Training session: making ontologies better
      • NCBO

1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology

    • October, 2005, Caxambu, Brazil
    • Michael Ashburner (Keynote)

Applied Biosystems Inc., Science Meeting

    • September, 2005, Asilomar, CA
    • Michael Ashburner (Keynote)

MGED8, Bergen

    • September, 2005
    • Michael Ashburner (Keynote)
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