Difference between revisions of "Meetings and Events"

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'''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ↑]'''
 
'''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ↑]'''
 
*October 14-15, 2006, Buffalo, NY
 
*October 14-15, 2006, Buffalo, NY
−
*'''NCBO Dissemination Workshop'''
+
*NCBO Dissemination Workshop
  
 
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]'''  
 
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]'''  
Line 115: Line 115:
  
 
'''Anatomy Ontology Workshop http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''
 
'''Anatomy Ontology Workshop http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''
−
**September 8-9, 2006, University of Washington, Seattle, WA
+
*September 8-9, 2006, University of Washington, Seattle, WA
−
*'''NCBO Dissemination Workshop'''
+
*NCBO Dissemination Workshop
  
 
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]
 
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]
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** Presentation by Michael Ashburner at the Conference In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot.
 
** Presentation by Michael Ashburner at the Conference In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot.
  
−
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop'''
+
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop ↑]'''
 
**July 24-28, 2006, Hinxton, UK
 
**July 24-28, 2006, Hinxton, UK
 
**http://fugo.sourceforge.net/news/index.php
 
**http://fugo.sourceforge.net/news/index.php
Line 138: Line 138:
 
'''9th International Protege Conference'''
 
'''9th International Protege Conference'''
 
**July 23-26, 2006, Stanford, CA
 
**July 23-26, 2006, Stanford, CA
−
**[http://protege.stanford.edu/conference/2006/ http://protege.stanford.edu/conference/2006/]
+
**[http://protege.stanford.edu/conference/2006/ http://protege.stanford.edu/conference/2006/ ↑]
 
** Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar
 
** Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar
  
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**July 17-19, 2006, NIH, Bethesda, MD
 
**July 17-19, 2006, NIH, Bethesda, MD
 
**Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield   
 
**Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield   
−
**[http://www.bisti.nih.gov/ahm2006/ http://www.bisti.nih.gov/ahm2006/]
+
**[http://www.bisti.nih.gov/ahm2006/ http://www.bisti.nih.gov/ahm2006/ ↑]
−
**[http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm Ontology: A Vision for the Future and Its Realization] Dissemination Event
+
**[http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑] Ontology: A Vision for the Future and Its Realization] Dissemination Event
 
***Organizers: Mark Musen, Barry Smith
 
***Organizers: Mark Musen, Barry Smith
  
Line 158: Line 158:
  
 
'''Training Course in Biomedical Ontologies'''
 
'''Training Course in Biomedical Ontologies'''
−
**[http://ontology.buffalo.edu/06/os2/index.html http://ontology.buffalo.edu/06/os2/index.html]
+
**[http://ontology.buffalo.edu/06/os2/index.html http://ontology.buffalo.edu/06/os2/index.html ↑]
 
**May 21-24, 2006, Schloss Dagstuhl, Germany
 
**May 21-24, 2006, Schloss Dagstuhl, Germany
 
**Attending: Werner Ceusters, Mark Musen, Barry Smith
 
**Attending: Werner Ceusters, Mark Musen, Barry Smith
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**May 17-20, 2006, Hinxton, UK
 
**May 17-20, 2006, Hinxton, UK
 
**Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
 
**Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
−
**[[Agenda PaTO | PATO meeting agenda]]
+
**[[Agenda PaTO | PATO meeting agenda]] ↑]
  
−
'''Fish Evolutionary Biology Working Group Meeting'''
+
'''Fish Evolutionary Biology Working Group Meeting''' ↑]
 
**April 9-11, 2006, National Evolutionary Synthesis Center (NESCent), Durham, NC
 
**April 9-11, 2006, National Evolutionary Synthesis Center (NESCent), Durham, NC
 
**Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield
 
**Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield
  
−
'''Gene Ontology Workshop'''
+
'''Gene Ontology Workshop''' ↑]
 
**March 31-April 3, 2006, St. Croix
 
**March 31-April 3, 2006, St. Croix
 
**Tutorial by Barry Smith
 
**Tutorial by Barry Smith
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'''Bio-IT LifeSciences Conference'''
 
'''Bio-IT LifeSciences Conference'''
 
**April 3-6, 2006, Boston, MA'''
 
**April 3-6, 2006, Boston, MA'''
−
**[http://www.lifesciencesexpo.com/live/26/ http://www.lifesciencesexpo.com/live/26/]
+
**[http://www.lifesciencesexpo.com/live/26/ http://www.lifesciencesexpo.com/live/26/ ↑]]
 
** Speaker: Michael Ashburner, Ben Franklin Award Lecture.
 
** Speaker: Michael Ashburner, Ben Franklin Award Lecture.
  
 
'''Workshop on Ontology of Images'''
 
'''Workshop on Ontology of Images'''
 
**March 24-25, 2006, Stanford, CA
 
**March 24-25, 2006, Stanford, CA
−
**[http://www.loni.ucla.edu/CCB/ CCB NCBC] and others with biomedical image ontologies
+
**[http://www.loni.ucla.edu/CCB/ ↑] CCB NCBC] and others with biomedical image ontologies
 
**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
 
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
 
*'''NCBO Dissemination Workshop'''
 
*'''NCBO Dissemination Workshop'''
  
−
'''Immunology Ontology Workshop: NIAID'''
+
'''Immunology Ontology Workshop: NIAID''' ↑]
 
**March 21-22, 2006, Gaitherburg, MD
 
**March 21-22, 2006, Gaitherburg, MD
 
** Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
 
** Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
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'''Semantic Technology Conference'''
 
'''Semantic Technology Conference'''
 
**March 6-9, 2006, San Jose, CA
 
**March 6-9, 2006, San Jose, CA
−
** [http://www.semantic-conference.com/ http://www.semantic-conference.com/ ]
+
** [http://www.semantic-conference.com/ ↑]
 
** Attending:  Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)  
 
** Attending:  Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)  
  
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**March 2-4, 2006, Stanford, CA
 
**March 2-4, 2006, Stanford, CA
 
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
 
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
−
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html http://www.smi.stanford.edu/research/cbio/cbio_meeting.html]
+
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html ↑]
 
**Entire project, NIH Program & Lead Science officers  
 
**Entire project, NIH Program & Lead Science officers  
  
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** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
 
** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
  
−
'''FuGO meeting'''
+
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''
 
** February 13-15, 2006, Philadelphia, PA
 
** February 13-15, 2006, Philadelphia, PA
−
**[http://fugo.sourceforge.net/news/index.php  http://fugo.sourceforge.net/news/index.php]
 
 
**Attending: Barry Smith
 
**Attending: Barry Smith
  
 
'''Fourth Semantic Interoperability for E-Government Conference'''
 
'''Fourth Semantic Interoperability for E-Government Conference'''
 
** February 9-10, 2006, MITRE, McLean, VA
 
** February 9-10, 2006, MITRE, McLean, VA
−
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
+
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 ↑] http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
 
**Attending: Barry Smith
 
**Attending: Barry Smith
  
 
'''NIAID BRC3 and Inter Operability Working Group meeting'''
 
'''NIAID BRC3 and Inter Operability Working Group meeting'''
 
** February 6-7, 2006,  Philadelphia, PA
 
** February 6-7, 2006,  Philadelphia, PA
−
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm]
+
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm ↑]
 
** Attending: Suzanna Lewis, Barry Smith
 
** Attending: Suzanna Lewis, Barry Smith
  
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**January 2-6, 2006, Maui, HI
 
**January 2-6, 2006, Maui, HI
 
**Michael Ashburner (Keynote)
 
**Michael Ashburner (Keynote)
−
**[http://psb.stanford.edu/ http://psb.stanford.edu/]
+
**[http://psb.stanford.edu/ http://psb.stanford.edu/ ↑]]
  
 
'''NCBC Meeting'''
 
'''NCBC Meeting'''
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**Introducting new NCBCs to each other and NIH staff
 
**Introducting new NCBCs to each other and NIH staff
  
−
'''Phenotype Annotation Meeting'''  
+
'''Phenotype Annotation Meeting''' ↑]
−
**December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
+
**December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
 
** Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
 
** Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
 
** Define requirements of phenotype annotation tools
 
** Define requirements of phenotype annotation tools
  
−
'''International Biocurator Meeting'''
+
'''International Biocurator Meeting''' ↑]
 
**December 8-11, 2005, Asilomar, CA
 
**December 8-11, 2005, Asilomar, CA
 
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
 
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
 
**Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)
 
**Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)
  
−
'''National Bioinformatics Network, South Africa'''
+
'''National Bioinformatics Network, South Africa''' ↑]
 
**December 2, 2005, University of Cape Town, SA
 
**December 2, 2005, University of Cape Town, SA
 
**Michael Ashburner (Keynote)
 
**Michael Ashburner (Keynote)
 
   
 
   
−
'''Phenotype Ontology Content Workshop'''
+
'''Phenotype Ontology Content Workshop''' ↑]
 
**Nov. 19-20, 2005, Cold Spring Harbor, NY
 
**Nov. 19-20, 2005, Cold Spring Harbor, NY
 
** Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield  
 
** Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield  
 
** [[Media:PhenoAgenda.doc]]
 
** [[Media:PhenoAgenda.doc]]
  
−
'''Stanford/Mayo/Berkeley Meetings'''
+
'''Stanford/Mayo/Berkeley Meetings''' ↑]
 
**Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
 
**Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
 
** Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam,  (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
 
** Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam,  (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
Line 293: Line 292:
 
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
 
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
  
−
'''Genome Informatics Meeting'''
+
'''Genome Informatics Meeting''' ↑]
 
**Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
 
**Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
 
**Suzanna Lewis (organizer, speaker)
 
**Suzanna Lewis (organizer, speaker)
  
−
'''Workshop on Bio-Ontologies'''
+
'''Workshop on Bio-Ontologies'''  
 
**October 28, 2005, Buffalo, NY
 
**October 28, 2005, Buffalo, NY
−
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf]
+
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]
 
**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
**Training session: making ontologies better
 
**Training session: making ontologies better
Line 305: Line 304:
  
 
'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
 
'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
−
**October, 2005, Caxambu, Brazil
+
**October, 2005, Caxambu, Brazil ↑]
−
**Michael Ashburner (Keynote)
 
−
 
 
−
'''Applied Biosystems Inc., Science Meeting'''
 
−
**September,  2005, Asilomar, CA
 
−
**Michael Ashburner (Keynote)
 
−
 
 
−
'''MGED8, Bergen'''
 
−
**September, 2005
 
 
**Michael Ashburner (Keynote)
 
**Michael Ashburner (Keynote)

Revision as of 10:12, 25 December 2009

NCBO-Sponsored Dissemination and Training Events 2005-2009

The Future of the Foundational Model of Anatomy ↑

  • November 11-12, 2009, Stanford, CA
  • NCBO Dissemination Workshop

From Aristotle to the Universal Core: Ontology Training Event ↑

  • October 10-11, 2009, Buffalo, NY
  • Co-sponsored with the University at Buffalo

Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes ↑

  • September 3-4, 2009, University of Milan, Biccaca, Italy
  • Co-sponsored by the Italian National Research Council

International Conference on Biomedical Ontology (ICBO) ↑

  • July 27-29, 2009, Buffalo, NY
  • Co-sponsored by the National Center for Ontological Research and the University at Buffalo

International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy ↑

  • Mar 30-Apr 1, 2009, Miami, FL
  • Co-sponsored by the International Association for Dental Research

InterOntology 2009 ↑

  • Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan
  • Special session on Biomedical Ontologies co-organized with the Japanese Center for Ontological Research

Evolutionary Biology and Ontologies ↑

  • January 5, 2009, Boston, MA
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)

Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes ↑

  • September 3-4, 2008, Dallas, TX
  • NCBO Dissemination Workshop

How to Make Useful Ontologies for Biomedicine ↑

  • July 19, 2008, Toronto, Canada.
  • NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)

Evolutionary Biology and Ontologies ↑

  • June 20, 2008, Minneapolis, MN
  • Held in conjunction with the ↑ Evolution 2008 meeting.
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)

Introduction to Biomedical Ontologies ↑

  • April 12-13, 2008, Buffalo, NY
  • NCBO Tutorial (Faculty: Barry Smith)

Ontologies of Cellular Networks ↑

  • March 27-28, 2008, Newark, NJ
  • NCBO Dissemination Workshop

Joint JCOR-NCBO International Biomedical Ontology Dissemination Workshop ↑

  • February 26-27, 2008, Tokyo, Japan
  • NCBO Dissemination Workshop
  • Co-sponsored with the Japanese Center for Ontological Research

Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences http://www.dagstuhl.de/07301 ↑

  • July 23-27, 2007: Schloss Dagstuhl, Germany
  • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner

Ontologies for Biomedicine – How to Make and Use Them ↑

  • July 21, 2007, Vienna, Austria
  • NCBO Tutorial at ISMB 2007 (Faculty: Nigam Shah and Barry Smith)

Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research ↑

Clinical Trial Ontology ↑

  • May 16-17 2007, NIH Campus, Bethesda, MD
  • NCBO Dissemination Workshop

Dagstuhl Seminar: Ontology Interoperability in Biomedicine ↑

  • March 27-30, 2007, Dagstuhl, Germany
  • NCBO Dissemination Workshop

The OBO Foundry - A Gold Standard Approach to Ontology Evaluation ↑

  • December 21, 2006
  • Ontolog Forum Talk by Barry Smith: Slides Audio

Phenotype Ontology ↑

  • December 1-2, 2006, Clark Center, Stanford, CA
  • NCBO Dissemination Workshop

Connecting BioPAX to Other Biomedical Ontologies ↑

  • November 20-21, 2006, MIT, Boston, MA
  • NCBO Tutorial (Faculty: Barry Smith)

Panel on the Future of HL7 ↑

  • AMIA Anual Symposium, November 14, 2006, Washington DC

Genomics Knowledge Representation for Clinical Trials ↑

  • AMIA Annual Symposium, November 12, 2006, Washington DC
  • Tutorial (Faculty: Nigam Shah, Barry Smith, and others)

Biomedical Imaging Ontologies ↑

  • November 11, 2006, AMIA Annual Symposium, Washington DC
  • NCBO Dissemination Workshop

Biomedical Ontology in Action ↑

  • November 8, 2006, Baltimore, MD
  • Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)

Ontology of Diseases ↑

  • November 6-7, 2006, John Hopkins University, Baltimore
  • NCBO Dissemination Workshop organized in association with Formal Ontology and Information Systems (FOIS 2006 Conference

The Philosophy of Biology ↑

  • October 14-15, 2006, Buffalo, NY
  • NCBO Dissemination Workshop

Ontology Development ↑

  • September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)

Anatomy Ontology Workshop http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]

  • September 8-9, 2006, University of Washington, Seattle, WA
  • NCBO Dissemination Workshop

Tutorial on Standards and Ontologies ↑

Ontologies for Biomedicine – How to Make and Use Them ↑

On the Need and Utility of Ontologies ↑" In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot

    • Jul 30- August 4, 2006, Fortaleza, Brazil.
    • Presentation by Michael Ashburner at the Conference In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot.

Functional Genomics Investigation Ontology (FuGO) 2nd Workshop ↑]

9th International Protege Conference

NCBC All Hands Meeting

    • July 17-19, 2006, NIH, Bethesda, MD
    • Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield
    • http://www.bisti.nih.gov/ahm2006/ ↑
    • ↑ Ontology: A Vision for the Future and Its Realization] Dissemination Event
      • Organizers: Mark Musen, Barry Smith

Core 1 & 2 Project Meeting

    • June 27-28, 2006, Berkeley, CA
    • Attending: Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute, Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
    • Working plan for core 1 & 2 goals

Core 1 & 2 Meeting

    • June 9, 2006, Berkeley, CA
    • Attending: Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)

Training Course in Biomedical Ontologies

NSF/RCN workshop on ontology and phylogeny

    • May 21-24, 2006, St. Louis, MO
    • Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield

Phenotype Annotation Meeting

    • May 17-20, 2006, Hinxton, UK
    • Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
    • PATO meeting agenda ↑]

Fish Evolutionary Biology Working Group Meeting ↑]

    • April 9-11, 2006, National Evolutionary Synthesis Center (NESCent), Durham, NC
    • Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield

Gene Ontology Workshop ↑]

    • March 31-April 3, 2006, St. Croix
    • Tutorial by Barry Smith

Bio-IT LifeSciences Conference

Workshop on Ontology of Images

    • March 24-25, 2006, Stanford, CA
    • ↑ CCB NCBC] and others with biomedical image ontologies
    • [Workshop on Ontology of Images | info on Ontology of Images workshop]
    • Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
  • NCBO Dissemination Workshop

Immunology Ontology Workshop: NIAID ↑]

    • March 21-22, 2006, Gaitherburg, MD
    • Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith

Semantic Technology Conference

    • March 6-9, 2006, San Jose, CA
    • ↑
    • Attending: Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)

NIH NCRR Animal Models workshop

    • March 6-7, 2006, Bethesda, MD
    • Attending: Monte Westerfield

cBio Project Meeting

    • March 2-4, 2006, Stanford, CA
    • Agenda
    • ↑
    • Entire project, NIH Program & Lead Science officers

BIRN ontology workshop

    • February 28-March 1, 2006, Stanford, CA
    • Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
  • NCBO Dissemination Workshop

NLM vocabulary collection and distribution meeting

    • February 27-28, 2006, NLM, Washington, DC
    • Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig

NIAID meeting

    • February, 2006, Washington, DC
    • Attending: Mark Musen

cBio Phenotype Annotation tool specification

    • February 21-23, 2006, Berkeley, CA
    • Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)

Mini-Syposium on Semantic Enrichment of Scientific Literature

    • February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
    • Attending: Michael Ashburner (speaker)

cBio OBD specification

    • February 17, 2006, Berkeley, CA
    • Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)

Functional Genomics Investigation Ontology (FuGO): First Workshop ↑

    • February 13-15, 2006, Philadelphia, PA
    • Attending: Barry Smith

Fourth Semantic Interoperability for E-Government Conference

NIAID BRC3 and Inter Operability Working Group meeting

PharmGKB and cBiO meeting

    • January 31, 2006, Stanford, CA
    • Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)

Pacific Symposium on Biocomputing, 2006

NCBC Meeting

    • Dec. 15-16, NIH, Bethesda, MD
    • Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
    • Introducting new NCBCs to each other and NIH staff

Phenotype Annotation Meeting ↑]

    • December 11-12, 2005, Asilomar conference center
    • Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
    • Define requirements of phenotype annotation tools

International Biocurator Meeting ↑]

National Bioinformatics Network, South Africa ↑]

    • December 2, 2005, University of Cape Town, SA
    • Michael Ashburner (Keynote)

Phenotype Ontology Content Workshop ↑]

    • Nov. 19-20, 2005, Cold Spring Harbor, NY
    • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
    • Media:PhenoAgenda.doc

Stanford/Mayo/Berkeley Meetings ↑]

    • Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
    • Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam, (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)

Forbes Dewey Meeting

    • Late October, MIT, Cambridge, MA
    • Michael Ashburner, chair
    • Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.

Genome Informatics Meeting ↑]

    • Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
    • Suzanna Lewis (organizer, speaker)

Workshop on Bio-Ontologies

    • October 28, 2005, Buffalo, NY
    • ↑
    • Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
    • Training session: making ontologies better
      • NCBO

1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology

    • October, 2005, Caxambu, Brazil ↑]
    • Michael Ashburner (Keynote)
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