Difference between revisions of "Tutorials and Classes"

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This is a draft schedule of tutorials and classes to be co-located with the [http://icbo.buffalo.edu International Conference on Biomedical Ontology], July 24-26, 2009
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__TOC__
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==Logistics and Registration ==
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'''Logistics''' details, including room locations, are available [[Logistics: Tutorials and Classes | here]].
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A '''registration form''' is available [http://icbo.buffalo.edu/Tutorials_and_Classes.pdf here]. Please note that pre-registration for tutorials and classes is compulsory.
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Tutorials and classes are co-located with the [http://icbo.buffalo.edu International Conference on Biomedical Ontology].
  
 
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'''Half-Day Tutorials '''  
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==Half-Day Tutorials==
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Morning sessions are from 9am to 12.30pm. Afternoon sessions are from 1.30pm to 5pm.
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'''July 20: Morning'''
  
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'''July 20'''
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Fabian Neuhaus (NIST): [http://www.bioontology.org/wiki/index.php/Neuhaus Formal Methods for Biologists]; also offered as part of 2-day class on [http://www.bioontology.org/wiki/index.php/Bittner_and_Donnelly Spatial Ontology and Qualitative Reasoning]
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*Slides: [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus]
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'''July 20: Afternoon'''
  
 
Mathias Brochhausen (IFOMIS): [[The Ontology of Paleobiology]]  
 
Mathias Brochhausen (IFOMIS): [[The Ontology of Paleobiology]]  
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*Slides: [http://icbo.buffalo.edu/presentations/Brochhausen.ppt Brochhausen]
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'''July 21: Morning'''
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Colin Batchelor (Royal Society of Chemistry): [[An Introduction to Chemistry Ontology]]
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*Slides: [http://icbo.buffalo.edu/presentations/Batchelor.ppt Batchelor]
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'''July 22: Morning'''
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Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]
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*[http://icbo.buffalo.edu/presentations/Smith.ppt Slides: Smith]; [http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video]
  
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'''July 21'''  
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'''July 22: Afternoon'''
  
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* Colin Batchelor (Royal Society of Chemistry): [[An Introduction to Chemistry Ontology]]
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Olivier Bodenreider (National Library of Medicine): [[An Introduction to Biomedical Ontology]]
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*Slides: [http://mor.nlm.nih.gov/pubs/pres/090722-ICBO-tutorial.pdf Bodenreider]
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Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]
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*[http://icbo.buffalo.edu/presentations//Ceusters.ppt Slides: Ceusters]; [http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video]
  
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* Ontology development tools
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'''July 23: Morning'''
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** The Protégé Ontology Editor and Knowledge Acquisition System
 
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** The OBO-Edit Ontology Developer's Environment
 
  
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'''July 22'''
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Natasha Noy (Stanford University) [[Using_WebProtege_and_NCBO_BioPortal | Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies]]
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*Slides: [http://icbo.buffalo.edu/presentations/Noy.pdf Noy]
  
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Fabian Neuhaus (NIST): Reasoning with First Order Logic
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'''July 23: Afternoon'''
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David Osumi-Sutherland (Flybase / Gene Ontology Consortium): [[OBO-Edit | The OBO-Edit Ontology Developer's Environment: A Practical Introduction]]
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*Slides: [http://www.bioontology.org/wiki/index.php/OBO-Edit Osumi-Sutherland]
  
 
----
 
----
  
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'''Two-Day Classes'''
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==Two-Day Classes==
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Classes meet from 9am to 5pm, with lunch from 12.30 to 1.30pm.
  
 
'''July 20-21'''  
 
'''July 20-21'''  
  
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Randall Dipert and Neil Williams (Buffalo): [[The Ontology of Events, Powers and Dispositions]]
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Randall Dipert and Neil Williams (Buffalo): [[The Ontology of Events, Powers and Dispositions]]
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*Slides:  [http://icbo.buffalo.edu/presentations/Dipert.pdf Dipert]
  
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David Hershenov (Buffalo): [[Metaphysical Foundations of Biomedical Ethics]]
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Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): [[Bittner_Donnelly_and_Neuhaus | Spatial Ontology and Qualitative Reasoning]]  
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*Slides:  [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus] [http://icbo.buffalo.edu/presentations/Donnelly.pdf Donnelly]
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'''July 22-23'''
  
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Thomas Bittner and Maureen Donnelly (Buffalo): [[Bittner and Donnelly | Spatial Ontology and Qualitative Reasoning]]
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Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]
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*[http://icbo.buffalo.edu/presentations/Smith.ppt Slides: Smith] [http://icbo.buffalo.edu/presentations/Ceusters.ppt Ceusters] [http://icbo.buffalo.edu/presentations/Ruttenberg.pdf Ruttenberg]  
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*[http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video]
  
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'''July 22-23'''
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David Hershenov (Buffalo): [[Metaphysical Foundations of Biomedical Ethics]]
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Olivier Bodenreider (National Library of Medicine): An Introduction to Biomedical Ontology
 
  
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Werner Ceusters (Buffalo), Barry Smith (Buffalo) and Alan Ruttenberg (Science Commons): [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]
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Latest revision as of 07:44, 27 December 2009


Logistics and Registration

Logistics details, including room locations, are available here.

A registration form is available here. Please note that pre-registration for tutorials and classes is compulsory.

Tutorials and classes are co-located with the International Conference on Biomedical Ontology.

Half-Day Tutorials

Morning sessions are from 9am to 12.30pm. Afternoon sessions are from 1.30pm to 5pm.

July 20: Morning

Fabian Neuhaus (NIST): Formal Methods for Biologists; also offered as part of 2-day class on Spatial Ontology and Qualitative Reasoning

July 20: Afternoon

Mathias Brochhausen (IFOMIS): The Ontology of Paleobiology

July 21: Morning

Colin Batchelor (Royal Society of Chemistry): An Introduction to Chemistry Ontology

July 22: Morning Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology

July 22: Afternoon

Olivier Bodenreider (National Library of Medicine): An Introduction to Biomedical Ontology

Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology

July 23: Morning

Natasha Noy (Stanford University) Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies

July 23: Afternoon

David Osumi-Sutherland (Flybase / Gene Ontology Consortium): The OBO-Edit Ontology Developer's Environment: A Practical Introduction

Two-Day Classes

Classes meet from 9am to 5pm, with lunch from 12.30 to 1.30pm.

July 20-21

Randall Dipert and Neil Williams (Buffalo): The Ontology of Events, Powers and Dispositions

Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): Spatial Ontology and Qualitative Reasoning

July 22-23

Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): From Basic Formal Ontology to the Information Artifact Ontology

David Hershenov (Buffalo): Metaphysical Foundations of Biomedical Ethics

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