BioPortal UI URLs

The following is a list of standard URLs that can be used with the BioPortal Ruby on Rails User Interface.

Ontology Metadata

• http://bioportal.bioontology.org/ontologies/{ontology_version_id}
  • Example: http://bioportal.bioontology.org/ontologies/42838
• http://bioportal.bioontology.org/ontologies/virtual/{ontology_virtual_id} (redirects to most recent version)
  • Example: http://bioportal.bioontology.org/ontologies/virtual/1032

Ontology Visualization

• http://bioportal.bioontology.org/visualize/{ontology_version_id}
  • Example: http://bioportal.bioontology.org/visualize/42838
• http://bioportal.bioontology.org/visualize/virtual/{ontology_virtual_id} (redirects to most recent version)
  • Example: http://bioportal.bioontology.org/visualize/virtual/1032
• DEPRECATED: http://bioportal.bioontology.org/virtual/{ontology_virtual_id} (redirects to most recent version)

Term in an Ontology

• Note: Terms should be URL-encoded
• http://bioportal.bioontology.org/visualize/{ontology_version_id}?conceptid={concept_id}
  • Example: http://bioportal.bioontology.org/visualize/42838/?conceptid=Roller_Bottle
• http://bioportal.bioontology.org/visualize/virtual/{ontology_virtual_id}/?conceptid={concept_id} (redirects to most recent version)
  • Example: http://bioportal.bioontology.org/visualize/virtual/1032/?conceptid=Roller_Bottle

Annotator

• http://bioportal.bioontology.org/annotator
• Parameters
  • semantictype={comma-separated list of semantic type codes}
  • ontologyid={comma-separated list of ontology version identifiers}
  • Example: http://bioportal.bioontology.org/annotator?semantictype=T002,T020&ontologyid=39215,40223

Resource Index

• http://bioportal.bioontology.org/resources
• Resources for a term: http://bioportal.bioontology.org/visualize/{ontology_version_id}/?conceptid={concept_id}#resource_index
  • Example: http://bioportal.bioontology.org/visualize/42838/?conceptid=Melanoma#resource_index
• http://bioportal.bioontology.org/visualize/virtual/{ontology_virtual_id}/?conceptid={concept_id}#resource_index (redirects to most recent version)
  • Example: http://bioportal.bioontology.org/visualize/virtual/1032/?conceptid=Melanoma#resource_index

Notes

• Notes for an ontology: http://bioportal.bioontology.org/ontologies/{ontology_version_id}#notes
  • Example: http://bioportal.bioontology.org/ontologies/42838#notes
• Notes for a term: http://bioportal.bioontology.org/visualize/{ontology_version_id}#notes
  • Example: http://bioportal.bioontology.org/visualize/42838/?conceptid=Melanoma#notes

Ontology Reviews

• http://bioportal.bioontology.org/ontologies/{ontology_version_id}#reviews
  • Example: http://bioportal.bioontology.org/ontologies/42789#reviews

Views for an Ontology

• http://bioportal.bioontology.org/ontologies/{ontology_version_id}#views
  • Example: http://bioportal.bioontology.org/ontologies/44501#views

Mappings

• All Mappings: http://bioportal.bioontology.org/mappings
• Mappings for a term: http://bioportal.bioontology.org/visualize/{ontology_version_id}#mappings
  • Example: http://bioportal.bioontology.org/visualize/42838/?conceptid=Melanoma#mappings