Difference between revisions of "PATO Meeting"
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| − | == General Information == | + | == General Information and Registration == |
The [http://ncbo.us National Center for Biomedical Ontology] will host a two-day meeting focused on the [http://obo.sourceforge.net/cgi-bin/detail.cgi?attribute_and_value Phenotype and Trait Ontology (PATO)] December 1-2, 2006 at Stanford University in Palo Alto, CA. | The [http://ncbo.us National Center for Biomedical Ontology] will host a two-day meeting focused on the [http://obo.sourceforge.net/cgi-bin/detail.cgi?attribute_and_value Phenotype and Trait Ontology (PATO)] December 1-2, 2006 at Stanford University in Palo Alto, CA. | ||
[http://www.fruitfly.org/pato/pato-form.html Register here.] | [http://www.fruitfly.org/pato/pato-form.html Register here.] | ||
| − | == | + | ==Agenda== |
| + | [[Media:Pheno_workshop_Dec2006.pdf]] | ||
| − | + | ==Minutes== | |
| − | |||
| − | + | [http://www.bioontology.org/wiki/images/c/c6/Updated_Meeting_Notes.pdf Media: Updated Meeting Minutes] | |
| − | |||
| − | |||
| − | |||
| − | + | ==Presentations== | |
| − | + | ||
| + | '''Day 1 presentations''' | ||
| + | |||
| + | Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature [[Media:GullyBurns.ppt]] | ||
| + | |||
| + | Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt [[Media:AlexanderGarcia.ppt]] | ||
| + | |||
| + | Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing [[Media:Adrien Coulet.pdf]] | ||
| + | |||
| + | Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics [[Media:TinaHernandez.ppt]] | ||
| + | |||
| + | James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals [[Media:JamesReecy.ppt]] | ||
| + | |||
| + | Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research [[Media:VictoriaPetri.ppt]] | ||
| + | |||
| + | Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration [[Media:CarolBastiani.ppt]] | ||
| + | |||
| + | Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease [[Media:JananEppig.ppt]] | ||
| + | |||
| + | Rex Chisholm: Phenotype curation tool and ontologies at dictyBase [[Media:RexChisholm.ppt]] | ||
| + | |||
| + | Minna Lehvaslaiho: HIV [[Media:MinnaLehvaslaiho.ppt]] | ||
| + | |||
| + | Eurie Hong: Yeast [[Media:EurieHong.ppt]] | ||
| + | |||
| + | Tanya Berardini: Arabidopsis [[Media:TanyaBerardini.ppt]] | ||
| + | |||
| + | Christopher Smith: Insect behavior [[Media:ChristopherSmith.ppt]] | ||
| + | |||
| + | Michael Ashburner: Drosophila (live demo, no slides) | ||
| + | |||
| + | Maryann Martone: BIRN | ||
| + | |||
| + | Jim Balhoff: NESCENT [[Media:JimBalhoff.pdf]] | ||
| + | |||
| + | |||
| + | '''Day 2 presentations''' | ||
| + | Chris Mungall [[Media:ChrisMungall.ppt]] | ||
| + | |||
| + | Monte Westerfield [[Media:MonteWesterfield.ppt]] | ||
==Venue == | ==Venue == | ||
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*[http://woodsidehotels.com/stanford/index.html Stanford Park Hotel] | *[http://woodsidehotels.com/stanford/index.html Stanford Park Hotel] | ||
*[http://www.starwoodhotels.com/sheraton/property/overview/index.html?propertyID=214 Sheraton] | *[http://www.starwoodhotels.com/sheraton/property/overview/index.html?propertyID=214 Sheraton] | ||
| − | + | *[http://www.stanford.edu/dept/hds/SLAC/ SLAC Guest House] | |
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| − | * | ||
Latest revision as of 09:58, 3 January 2007
General Information and Registration
The National Center for Biomedical Ontology will host a two-day meeting focused on the Phenotype and Trait Ontology (PATO) December 1-2, 2006 at Stanford University in Palo Alto, CA.
Agenda
Media:Pheno_workshop_Dec2006.pdf
Minutes
Media: Updated Meeting Minutes
Presentations
Day 1 presentations
Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature Media:GullyBurns.ppt
Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt Media:AlexanderGarcia.ppt
Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing Media:Adrien Coulet.pdf
Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics Media:TinaHernandez.ppt
James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals Media:JamesReecy.ppt
Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research Media:VictoriaPetri.ppt
Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration Media:CarolBastiani.ppt
Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease Media:JananEppig.ppt
Rex Chisholm: Phenotype curation tool and ontologies at dictyBase Media:RexChisholm.ppt
Minna Lehvaslaiho: HIV Media:MinnaLehvaslaiho.ppt
Eurie Hong: Yeast Media:EurieHong.ppt
Tanya Berardini: Arabidopsis Media:TanyaBerardini.ppt
Christopher Smith: Insect behavior Media:ChristopherSmith.ppt
Michael Ashburner: Drosophila (live demo, no slides)
Maryann Martone: BIRN
Jim Balhoff: NESCENT Media:JimBalhoff.pdf
Day 2 presentations
Chris Mungall Media:ChrisMungall.ppt
Monte Westerfield Media:MonteWesterfield.ppt
Venue
Stanford University Clark Center, room S360
Directions to Stanford Medical Center
Map of Stanford Medical Center--see "C", Clark Center
Directions on taking Free Marguerite Shuttle Bus--take Line A to Medical Center
Accommodations
We aren't reserving a block of rooms anywhere, but these local hotels are close by and have Stanford shuttle service.