Difference between revisions of "Phenote:Agenda: May 1, 2007"

From NCBO Wiki
Jump to navigation Jump to search
 
(3 intermediate revisions by the same user not shown)
Line 8: Line 8:
 
* better err msg on data adapter failing to load any data (wrong adapter)
 
* better err msg on data adapter failing to load any data (wrong adapter)
 
* refactored how ontologies are stored in phenote - good for post composition parsing and reasoning (for graphics & such down the road)
 
* refactored how ontologies are stored in phenote - good for post composition parsing and reasoning (for graphics & such down the road)
 +
*added new configs "omim.cfg" zfin_standalone.cfg"
  
 
==What's *bug*ing you?==
 
==What's *bug*ing you?==
 +
*abnormal/normal tags.  these are also in PATO.  currently it is a child of continuant.  these should be outside.  there's a current request on the tracker to move the term #1690773.
 +
*when there's no appropriate pato term, annotate to PATO:quality.  its a good placeholder.  add a tag=abnormal.
 +
*don't use normal/abnormal except as tags.
 +
* assumption that leaving tag off means abnormal, only sometimes
 +
*want abnormalnormal as a checkbox
  
 
==Setting priorities==
 
==Setting priorities==
 +
* configuration - allow for some/all of RO in the post-comp (ex: only part_of)
  
 
==Q&A==
 
==Q&A==

Latest revision as of 08:27, 1 May 2007

New Phenote features

  • move autocompletion filters into menu
  • brief documentation on configuration
  • multiple differentia for post composition
  • can configure with namespace for ontology/obo
  • sticky free text bug fixed
  • worm adapter
  • better err msg on data adapter failing to load any data (wrong adapter)
  • refactored how ontologies are stored in phenote - good for post composition parsing and reasoning (for graphics & such down the road)
  • added new configs "omim.cfg" zfin_standalone.cfg"

What's *bug*ing you?

  • abnormal/normal tags. these are also in PATO. currently it is a child of continuant. these should be outside. there's a current request on the tracker to move the term #1690773.
  • when there's no appropriate pato term, annotate to PATO:quality. its a good placeholder. add a tag=abnormal.
  • don't use normal/abnormal except as tags.
  • assumption that leaving tag off means abnormal, only sometimes
  • want abnormalnormal as a checkbox

Setting priorities

  • configuration - allow for some/all of RO in the post-comp (ex: only part_of)

Q&A

Administrative items

  • OK to move this slot to 8:30am?
  • would like to have a webinar to show the features of phenote.
    • recommendations on when?
    • recommendations on what audience to target?