Difference between revisions of "Ontology and Cellular Networks"

Latest revision as of 06:55, 3 January 2008

See http://www.bioontology.org/wiki/index.php/Networks

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-== General Information ==
+See http://www.bioontology.org/wiki/index.php/Networks
-The [http://ncbo.us National Center for Biomedical Ontology] will host a two-day workshop focused on ontology and cellular networks on October 30-31, 2007 in Newark, NJ. The meeting will be organized jointly with the [http://magnet.c2b2.columbia.edu/ MagNet] Center for Multiscale Analysis of Genetic and Cellular Networks.
-== Goals ==
-The goals of this workshop are:
-*1. to provide an introduction to the basic tools and methods of ontology
-*2. to take the first steps towards developing an ontology of cellular networks.
-*3. to address alternative approaches to ontology construction, with an emphasis on statistical vs. manual approaches
-*4. to foster networking between ontology developer groups in the field of biomedical informatics
-== Agenda ==
-'''Tuesday October 30'''
-''Morning''
-* 8.30am Registration and Continental Breakfast
-* 9am Participant Self-Introductions
-'''Session I: Overview of NCBC Collaborative Work in Ontology'''
-* Moderator: Peter Lyster (NIH/NIGMS)
-*  9.15am   David States (NCIBI)
-*  9.45am   Chris Mungall (NCBO)
-* 11.15am   Coffee
-* 11.30am   Aris Floratos (MAGNET
-* Representatives from other NCBCs
-''Afternoon''
-* 12.45pm   Lunch Break
-'''Session II: Ontologies for Cellular Networks (Part 1)'''
-* Moderator: Andrea Califano (MAGNET, Columbia University)
-*  2.00pm   Barry Smith (NCBO): A Vision for the Future of Biomedical Ontology
-*  2.45pm   Lindsay Cowell (Duke): The Cell Ontology
-*  3.30pm   Coffee
-*  4.00pm   Yves Lussier (MAGNET): Integrating the Cell Ontology with other Ontologies and with Text  - Bridging the Modeling Gap
-*  4.30pm   Aris Floratos (MAGNET, Columbia University): BISON - The Bioinformatics Interface Structured Ontology
-*  5.00pm   Balaji S. Srinivasan (Stanford): Automatic Population of a Network Ontology
-'''Wednesday October 31'''
-''Morning''
-*8.30am Continental Breakfast
-'''Session III: Scientific Ontologies'''
-* Moderator: Zak Kohane (i2b2)
-* 9am
-*10.30am Coffee
-*11.00am
-''Afternoon''
-*12.45pm Lunch Break
-'''Session IV: Ontologies for Cellular Networks (Part 2)
-* 2.00pm   Alan Ruttenberg (Science Commons): The Ontology of Networks and Pathways - An Overview
-* 3.00pm   TBD
-* 4.00pm Meeting Closes
-== Participants (Provisional List) ==
-Robert Arp - NCBO, Buffalo, NY
-Michael Ashburner - NCBO, Cambridge University Department of Genetics
-Brian Athey - NCIBI, University of Michigan
-Ed Barbour - Rockefeller University
-Andrea Califano - MagNet, Columbia University, NY
-Kei Cheung - Yale, CT
-Lindsay Cowell - Duke University
-Nick Khazanov - Rockefeller University
-Isaac Kohane - i2b2 / Harvard University
-Natasha Lenkova - Rockefeller University
-Suzanna Lewis - NCBO, Berkeley, CA
-Peter Lyster - NIH/NIGMS
-Yves Lussier - MagNet, University of Chicago, IL
-Avi Ma'ayan - Department of Pharmacology & Systems Therapeutics, Mount Sinai School of Medicine
-Chris Mungall -- NCBO, Berkeley, CA
-Alan Ruttenberg - Science Commons, Boston, MA
-Nigam Shah - NCBO, Stanford, CA
-Karen Skinner - NIH/NIDA
-Barry Smith - NCBO, Buffalo, NY
-Balaji S. Srinivasan - PharmGKB, Stanford, CA
-David States + 1 further representative - NCIBI, University of Michigan
-Ross Whitaker - NA-MIC, Utah
-CCB ?
-==Venue ==
-[http://www1.hilton.com/en_US/hi/hotel/EWRAHHH-Hilton-Newark-Airport-New-Jersey/index.do Hilton Hotel Newark Airport] A block of rooms has been set aside for early registrants.
-==Links ==
-[http://www.ncbcs.org/ National Centers for Biomedical Computing]
-* [http://www.ncbcs.org/summary.html#ncbo National Center for Biomedical Ontology]
-* [http://www.ncbcs.org/summary.html#magnet National Center for the Multi-Scale Analysis of Genomic and Cellular Networks]
-* [http://www.ncbcs.org/summary.html#ccb Center for Computational Biology]
-* [http://www.ncbcs.org/summary.html#i2b2 Informatics for Integrating Biology and the Bedside]
-* [http://www.ncbcs.org/summary.html#namic National Alliance for Medical Imaging Computing]
-* [http://www.ncbcs.org/summary.html#simbios Physics-based Simulation of Biological Structures]
-* [http://www.ncbcs.org/summary.html#ncibi National Center for Integrative Biomedical Informatics]
-[http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies Ontology Working Group]
-==Literature==
-[http://jinome.stanford.edu/pdfs/bbm038v1.pdf Current progress in network research]

Difference between revisions of "Ontology and Cellular Networks"

Latest revision as of 06:55, 3 January 2008

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