Difference between revisions of "Ontology and Cellular Networks"

Latest revision as of 06:55, 3 January 2008

See http://www.bioontology.org/wiki/index.php/Networks

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-== General Information ==
+See http://www.bioontology.org/wiki/index.php/Networks
-The [http://ncbo.us National Center for Biomedical Ontology] will host a two-day workshop focused on ontology and cellular networks on October 30-31, 2007 in Newark, NJ.
-== Goals ==
-The goals of this workshop are:
-*1. to provide an introduction to the basic tools and methods of ontology
-*2. to take the first steps towards developing an ontology of cellular networks.
-*3. to address alternative approaches to ontology construction, with an emphasis on statistical/NLP vs. manual approaches
-*4. to foster networking between ontology developer groups in the field of biomedical informatics
-== Agenda ==
-'''Tuesday October 30'''
-''Morning''
-* 8.30am Registration and Continental Breakfast
-'''Ontology of Cellular Networks: Some Basic Ingredients'''
-* Moderator: Peter Lyster (NIH/NIGMS)
-* 9am Participant Self-Introductions
-*  9.15am   Barry Smith (NCBO, Buffal): What is a Network?
-*  9.45am   Lindsay Cowell (Duke): The Cell Ontology
-* 10.15am   Coffee
-* 10.45am   Chris Mungall (NCBO, Berkeley): Representing Relations: The Methodology of Cross-Products
-* 11.15am   BioPAX/Reactome/TBD
-* 12.45pm   Lunch Break
-''Afternoon''
-'''Constructing an Ontology of Cellular Networks'''
-* Moderator: Alan Ruttenberg (Science Commons / Semantic Web HCLSIG)
-This will be an interactive hands-on session, in which data annotation needs will be presented on the basis of which the attempt will be made to construct the beginnings of a cellular network ontology.
-'''Wednesday October 31'''
-''Morning''
-*8.30am Continental Breakfast
-'''Ontology of Cellular Networks: Alternative Approaches'''
-* Moderator: Michael Ashburner (Cambridge)
-*  9.00am   Aris Floratos (MAGNET, Columbia University): BISON - The Bioinformatics Interface Structured Ontology
-*  9.30pm   Balaji S. Srinivasan (Stanford): Automatic Population of a Network Ontology
-*  10.00am
-*  10.30am Coffee
-*  11.00am   Yves Lussier (Chicago): Integrating the Cell Ontology with other Ontologies and with Text  - Bridging the Modeling Gap
-*  11.30am   Discussion on Statistical/NLP vs. Manual Approaches to Ontology Construction
-*12.45pm Lunch Break
-''Afternoon''
-'''Ontology of Cellular Networks: The Next Steps'''
-* Moderator: Suzanna Lewis (NCBO, Berkeley)
-Session starts at 2pm
-== Participants (Provisional List) ==
-Robert Arp - NCBO, Buffalo, NY
-Michael Ashburner - NCBO, Cambridge University Department of Genetics
-Ed Barbour - Rockefeller University
-Kei Cheung - Yale, CT
-Lindsay Cowell - Duke University
-Nick Khazanov - Rockefeller University
-Natasha Lenkova - Rockefeller University
-Suzanna Lewis - NCBO, Berkeley, CA
-Peter Lyster - NIH/NIGMS
-Yves Lussier - MagNet, University of Chicago, IL
-Avi Ma'ayan - Department of Pharmacology & Systems Therapeutics, Mount Sinai School of Medicine
-Chris Mungall -- NCBO, Berkeley, CA
-Alan Ruttenberg - Science Commons, Boston, MA
-Nigam Shah - NCBO, Stanford, CA
-Karen Skinner - NIH/NIDA
-Barry Smith - NCBO, Buffalo, NY
-Balaji S. Srinivasan - PharmGKB, Stanford, CA
-David States - NCIBI, University of Michigan
-Ross Whitaker - NA-MIC, Utah
-==Venue ==
-[http://www1.hilton.com/en_US/hi/hotel/EWRAHHH-Hilton-Newark-Airport-New-Jersey/index.do Hilton Hotel Newark Airport] A block of rooms has been set aside for early registrants.
-==Links ==
-[http://www.ncbcs.org/ National Centers for Biomedical Computing]
-* [http://www.ncbcs.org/summary.html#ncbo National Center for Biomedical Ontology]
-* [http://www.ncbcs.org/summary.html#magnet National Center for the Multi-Scale Analysis of Genomic and Cellular Networks]
-* [http://www.ncbcs.org/summary.html#ccb Center for Computational Biology]
-* [http://www.ncbcs.org/summary.html#i2b2 Informatics for Integrating Biology and the Bedside]
-* [http://www.ncbcs.org/summary.html#namic National Alliance for Medical Imaging Computing]
-* [http://www.ncbcs.org/summary.html#simbios Physics-based Simulation of Biological Structures]
-* [http://www.ncbcs.org/summary.html#ncibi National Center for Integrative Biomedical Informatics]
-[http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies Ontology Working Group]
-==Literature==
-[http://jinome.stanford.edu/pdfs/bbm038v1.pdf Current progress in network research]

Difference between revisions of "Ontology and Cellular Networks"

Latest revision as of 06:55, 3 January 2008

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