Difference between revisions of "DRAFT AGENDA"
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'''Thursday, March 27, 2008''' | '''Thursday, March 27, 2008''' | ||
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* 9:00am Registration and Continental Breakfast | * 9:00am Registration and Continental Breakfast | ||
| Line 9: | Line 7: | ||
* 9:30am Participant Self-Introductions | * 9:30am Participant Self-Introductions | ||
| − | * 10:00am '''Session 1 - Biology of Pathways and Networks (Moderator: Lussier)''' | + | * 10:00am '''Session 1 - Biology of Pathways and Networks (Moderator: Yves Lussier)''' |
| + | |||
:Potential presenters: | :Potential presenters: | ||
| − | :: | + | ::Fiona Brinkman |
::Nancy Gough | ::Nancy Gough | ||
| + | ::Yves Lussier | ||
::Chris Sander | ::Chris Sander | ||
| − | :: | + | ::Stuart Sealfon |
| − | |||
:Potential topics: | :Potential topics: | ||
| Line 22: | Line 21: | ||
::types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...) | ::types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...) | ||
::granularity (molecular, cellular, physiological) ... | ::granularity (molecular, cellular, physiological) ... | ||
| − | ::cellular networks and their surroundings | + | ::cellular networks and their surroundings: tissues, the extracellular matrix, and cell-environment interactions |
| − | |||
* 11:00am Refreshment Break | * 11:00am Refreshment Break | ||
* 11:15am | * 11:15am | ||
| − | * 12:30pm | + | * 12:30pm Lunch Break |
| − | * 1:30pm '''Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Ruttenberg) | + | * 1:30pm '''Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Alan Ruttenberg) |
:Potential presenters: | :Potential presenters: | ||
| + | ::Peter Lyster | ||
::Avi Ma'ayan | ::Avi Ma'ayan | ||
| − | |||
::Andre Rhzetsky | ::Andre Rhzetsky | ||
::Oliver Ruebenacker | ::Oliver Ruebenacker | ||
| Line 40: | Line 38: | ||
* 3:30pm Refreshment Break | * 3:30pm Refreshment Break | ||
| − | + | * 3:45pm '''Session 3 - Introduction to Ontology (Moderator: Barry Smith)''' | |
| − | * 3:45pm '''Session 3 - Introduction to Ontology (Moderator: Smith)''' | ||
:Potential presenters | :Potential presenters | ||
| Line 50: | Line 47: | ||
* 5:00pm End of Day 1 | * 5:00pm End of Day 1 | ||
| − | '''Friday, March 28, 2008 | + | '''Friday, March 28, 2008''' |
* 8:30am Continental Breakfast | * 8:30am Continental Breakfast | ||
| − | * 9:00am Session 4: '''Current Approaches to Pathway and Network Ontology | + | * 9:00am Session 4: '''Current Approaches to Pathway and Network Ontology (Moderator: Richard Scheuermann)''' |
| − | (Moderator: Richard Scheuermann)''' | ||
:Potential presenters: | :Potential presenters: | ||
::Bill Bug | ::Bill Bug | ||
| + | ::Peter d'Eustachio: Reactome | ||
::Ken Fukuda: INOH Pathway Database | ::Ken Fukuda: INOH Pathway Database | ||
| − | :: | + | ::Darren Natale: Protein Ontology |
::Balaji S. Srinivasan | ::Balaji S. Srinivasan | ||
| − | |||
* 10:45am Refreshment Break | * 10:45am Refreshment Break | ||
| − | + | * 11:00am | |
| − | * 11:00am | ||
| − | |||
* 12.30pm Lunch Break | * 12.30pm Lunch Break | ||
| − | * 1:30 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg) | + | * 1:30 '''Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)''' |
| − | : | + | :Open discussion; presenters and topics to be decided |
| − | ::Approaches to extending the OBO Foundry to include pathway and network ontologies | + | ::(example:) Approaches to extending the OBO Foundry to include pathway and network ontologies |
* 4:00pm End of Day 2 | * 4:00pm End of Day 2 | ||
Latest revision as of 11:15, 4 February 2008
Preliminary Agenda
Thursday, March 27, 2008
- 9:00am Registration and Continental Breakfast
- 9:30am Participant Self-Introductions
- 10:00am Session 1 - Biology of Pathways and Networks (Moderator: Yves Lussier)
- Potential presenters:
- Fiona Brinkman
- Nancy Gough
- Yves Lussier
- Chris Sander
- Stuart Sealfon
- Potential topics:
- signalling pathways, metabolic pathways, ...
- regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
- types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
- granularity (molecular, cellular, physiological) ...
- cellular networks and their surroundings: tissues, the extracellular matrix, and cell-environment interactions
- 11:00am Refreshment Break
- 11:15am
- 12:30pm Lunch Break
- 1:30pm Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Alan Ruttenberg)
- Potential presenters:
- Peter Lyster
- Avi Ma'ayan
- Andre Rhzetsky
- Oliver Ruebenacker
- Richard Scheuermann
- Andrea Splendiani
- 3:30pm Refreshment Break
- 3:45pm Session 3 - Introduction to Ontology (Moderator: Barry Smith)
- Potential presenters
- Lindsay Cowell
- Barry Smith
- J. L. E. Mejino Jr.
- 5:00pm End of Day 1
Friday, March 28, 2008
- 8:30am Continental Breakfast
- 9:00am Session 4: Current Approaches to Pathway and Network Ontology (Moderator: Richard Scheuermann)
- Potential presenters:
- Bill Bug
- Peter d'Eustachio: Reactome
- Ken Fukuda: INOH Pathway Database
- Darren Natale: Protein Ontology
- Balaji S. Srinivasan
- 10:45am Refreshment Break
- 11:00am
- 12.30pm Lunch Break
- 1:30 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)
- Open discussion; presenters and topics to be decided
- (example:) Approaches to extending the OBO Foundry to include pathway and network ontologies
- 4:00pm End of Day 2