Difference between revisions of "CL:Checklist"
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(New page: == cardioblast (sensu Arthropoda) == cardioblast (sensu Arthropoda) [http://obofoundry.org/obo/CL:0000465 CL:0000465] * Alex: Y == blood cell (sensu Nematoda and Protostomia) == blo...) |
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| + | = Name Changes = | ||
| + | |||
| + | == cell by organism == | ||
| + | |||
| + | cell by organism [http://obofoundry.org/obo/CL:0000004 CL:0000004] becomes cell by phylum | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == macrophage (sensu Diptera) == | ||
| + | |||
| + | macrophage (sensu Diptera) [http://obofoundry.org/obo/CL:0000401 CL:0000401] becomes dipeteran macrophage | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | macrophage (CL:0000235) becomes vertebrate macrophage Y | ||
| + | |||
| + | == phagocyte (sensu Vertebrata) == | ||
| + | |||
| + | phagocyte (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000518 CL:0000518] becomes vertebrate macrophage | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | phagocyte (sensu Nematoda and Protostomia) becomes invertebrate phagocyte Y | ||
| + | cardiac muscle cell (sensu Arthopoda) becomes cardioblast-derived cardiac muscle cell Y | ||
| + | epidermal cell (sensu Insecta)– becomess epidemioblast-derived epidermal cell Y | ||
| + | |||
| + | == podocyte (sensu Diptera) == | ||
| + | |||
| + | podocyte (sensu Diptera) [http://obofoundry.org/obo/CL:0000391 CL:0000391] becomes Dipteran podocyte | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == podocyte == | ||
| + | |||
| + | podocyte [http://obofoundry.org/obo/CL:0000653 CL:0000653] becomes vertebrate podocyte | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == glioblast (sensu Nematoda and Protostomia) == | ||
| + | |||
| + | glioblast (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:? CL:?] becomes invertebrate glioblast | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == glioblast (sensu Vertebrata) == | ||
| + | |||
| + | glioblast (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000339 CL:0000339] becomes vertbrate glioblast | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == glial cell (sensu Nematoda and Protostomia) ) == | ||
| + | |||
| + | glial cell (sensu Nematoda and Protostomia) ) [http://obofoundry.org/obo/CL:? CL:?] becomes invertebrate glial cell | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == glial cell (sensu Vertebrata) ) == | ||
| + | |||
| + | glial cell (sensu Vertebrata) ) [http://obofoundry.org/obo/CL:? CL:?] becomes invertebrate glial cell | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == neuron associated cell (sensu Nematoda and Protostomia) ) == | ||
| + | |||
| + | neuron associated cell (sensu Nematoda and Protostomia) ) [http://obofoundry.org/obo/CL:? CL:?] becomes invertebrate NAS | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == neuron associated cell (sensu Vertebrata) ) == | ||
| + | |||
| + | neuron associated cell (sensu Vertebrata) ) [http://obofoundry.org/obo/CL:? CL:?] becomes vertebrate NAS | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
| + | == extraembryonic cell/ germ line stem cell ) == | ||
| + | |||
| + | extraembryonic cell/ germ line stem cell ) [http://obofoundry.org/obo/CL:? CL:?] replaced with EEC/primordial germ cell | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | = Obsoletions/Merges = | ||
| + | |||
| + | |||
== cardioblast (sensu Arthropoda) == | == cardioblast (sensu Arthropoda) == | ||
| − | + | cardioblast (sensu Arthropoda) [http://obofoundry.org/obo/CL:0000465 CL:0000465] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== blood cell (sensu Nematoda and Protostomia) == | == blood cell (sensu Nematoda and Protostomia) == | ||
| − | + | blood cell (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000390 CL:0000390] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== hemocyte (sensu Nematoda and Protostomia) == | == hemocyte (sensu Nematoda and Protostomia) == | ||
| − | + | hemocyte (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000387 CL:0000387] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== prohemocyte (sensu Nematoda and Protostomia) == | == prohemocyte (sensu Nematoda and Protostomia) == | ||
| − | + | prohemocyte (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000385 CL:0000385] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== chemotactic amoeboid cell (sensu Mycetozoa) == | == chemotactic amoeboid cell (sensu Mycetozoa) == | ||
| − | + | chemotactic amoeboid cell (sensu Mycetozoa) [http://obofoundry.org/obo/CL:0000289 CL:0000289] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== prohemocyte (sensu Nematoda and Protostomia) == | == prohemocyte (sensu Nematoda and Protostomia) == | ||
| − | + | prohemocyte (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000385 CL:0000385] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== chemotactic amoeboid cell (sensu Mycetozoa) == | == chemotactic amoeboid cell (sensu Mycetozoa) == | ||
| − | + | chemotactic amoeboid cell (sensu Mycetozoa) [http://obofoundry.org/obo/CL:0000289 CL:0000289] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== Distal tip cell (sensu nematoda) – == | == Distal tip cell (sensu nematoda) – == | ||
| − | + | Distal tip cell (sensu nematoda) – [http://obofoundry.org/obo/CL:0000422 CL:0000422] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== pigment cell (sensu Nematoda and Protostomia) == | == pigment cell (sensu Nematoda and Protostomia) == | ||
| − | + | pigment cell (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000341 CL:0000341] | |
* Alex: Y maybe, but it would be great to get a definition for pigment cell | * Alex: Y maybe, but it would be great to get a definition for pigment cell | ||
| + | |||
== pigment cell (sensu Vertebrata) == | == pigment cell (sensu Vertebrata) == | ||
| − | + | pigment cell (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000342 CL:0000342] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== visual pigment cell (sensu Nematoda & Protostomia) == | == visual pigment cell (sensu Nematoda & Protostomia) == | ||
| − | + | visual pigment cell (sensu Nematoda & Protostomia) [http://obofoundry.org/obo/CL:0001658 CL:0001658] | |
* Alex: Mycetozoa Y | * Alex: Mycetozoa Y | ||
| + | |||
== visual pigment cell (sensu Vertebrata) == | == visual pigment cell (sensu Vertebrata) == | ||
| − | + | visual pigment cell (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000343 CL:0000343] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== non-visual cell (sensu Vertebrata) == | == non-visual cell (sensu Vertebrata) == | ||
| − | + | non-visual cell (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000344 CL:0000344] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== receptor cell (sensu Animalia) == | == receptor cell (sensu Animalia) == | ||
| − | + | receptor cell (sensu Animalia) [http://obofoundry.org/obo/CL:0000006 CL:0000006] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== sperm cell (sensu Viridiplantae) == | == sperm cell (sensu Viridiplantae) == | ||
| − | + | sperm cell (sensu Viridiplantae) [http://obofoundry.org/obo/CL:0000366 CL:0000366] | |
| + | |||
| + | * Alex: Y | ||
| − | |||
== spore (sensu Mycetozoa) == | == spore (sensu Mycetozoa) == | ||
| − | + | spore (sensu Mycetozoa) [http://obofoundry.org/obo/CL:000029 CL:000029] | |
* Alex: N, see my email discussion | * Alex: N, see my email discussion | ||
| + | |||
== vegetative cell == | == vegetative cell == | ||
| − | + | vegetative cell [http://obofoundry.org/obo/CL:0000296 CL:0000296] | |
* Alex: N, no true commonalities here | * Alex: N, no true commonalities here | ||
| + | |||
== vegetative cell (sensu Fungi) == | == vegetative cell (sensu Fungi) == | ||
| − | + | vegetative cell (sensu Fungi) [http://obofoundry.org/obo/CL:0000334 CL:0000334] | |
* Alex: N, no true commonalities here | * Alex: N, no true commonalities here | ||
| + | |||
== vegetative cell (sensu Mycetozoa) == | == vegetative cell (sensu Mycetozoa) == | ||
| − | + | vegetative cell (sensu Mycetozoa) [http://obofoundry.org/obo/CL:0000263 CL:0000263] | |
* Alex: N, no true commonalities here | * Alex: N, no true commonalities here | ||
| + | |||
== CNS neuron (sensu Nematoda and Protostomia) == | == CNS neuron (sensu Nematoda and Protostomia) == | ||
| − | + | CNS neuron (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000028 CL:0000028] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== CNS neuron (sensu Vertebrata) == | == CNS neuron (sensu Vertebrata) == | ||
| − | + | CNS neuron (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000117 CL:0000117] | |
* Alex: Y | * Alex: Y | ||
| Line 147: | Line 270: | ||
neuroblast (sensu Nematoda and Protostomia) Y | neuroblast (sensu Nematoda and Protostomia) Y | ||
| + | |||
== neuroblast (sensu Vertebrata) == | == neuroblast (sensu Vertebrata) == | ||
| − | + | neuroblast (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000337 CL:0000337] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== neuroglioblast (sensu Nematoda) == | == neuroglioblast (sensu Nematoda) == | ||
| − | + | neuroglioblast (sensu Nematoda) [http://obofoundry.org/obo/CL:0000662 CL:0000662] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== support cell (sensu Nematoda and Protostomia) == | == support cell (sensu Nematoda and Protostomia) == | ||
| − | + | support cell (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000378 CL:0000378] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== support cell (sensu Nematoda) == | == support cell (sensu Nematoda) == | ||
| − | + | support cell (sensu Nematoda) [http://obofoundry.org/obo/CL:0000619 CL:0000619] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== female germ line stem cell (sensu Nematoda and Protostomia) == | == female germ line stem cell (sensu Nematoda and Protostomia) == | ||
| − | + | female germ line stem cell (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000088 CL:0000088] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== female germ line stem cell (sensu Vertebrata) == | == female germ line stem cell (sensu Vertebrata) == | ||
| − | + | female germ line stem cell (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000090 CL:0000090] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== germ line stem cell (sensu Nematoda and Protostomia) == | == germ line stem cell (sensu Nematoda and Protostomia) == | ||
| − | + | germ line stem cell (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000086 CL:0000086] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== germ line stem cell (sensu Vertebrata) == | == germ line stem cell (sensu Vertebrata) == | ||
| − | + | germ line stem cell (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000085 CL:0000085] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== male germ line stem cell (sensu Nematoda and Protostomia) == | == male germ line stem cell (sensu Nematoda and Protostomia) == | ||
| − | + | male germ line stem cell (sensu Nematoda and Protostomia) [http://obofoundry.org/obo/CL:0000087 CL:0000087] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== male germ line stem cell (sensu Vertebrata) == | == male germ line stem cell (sensu Vertebrata) == | ||
| − | + | male germ line stem cell (sensu Vertebrata) [http://obofoundry.org/obo/CL:0000089 CL:0000089] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== male germ line stem cell == | == male germ line stem cell == | ||
| − | + | male germ line stem cell [http://obofoundry.org/obo/CL:0000016 CL:0000016] | |
* Alex: Y | * Alex: Y | ||
| − | Cone bipolar cells types 1-9 (sensu mouse) Y | + | |
| + | == Cone bipolar cells types 1-9 (sensu mouse) ) == | ||
| + | |||
| + | Cone bipolar cells types 1-9 (sensu mouse) ) [http://obofoundry.org/obo/CL:? CL:?] | ||
| + | |||
| + | * Alex: Y | ||
| + | |||
| + | |||
| + | |||
== cone cell (sensu Endopterygota) == | == cone cell (sensu Endopterygota) == | ||
| − | + | cone cell (sensu Endopterygota) [http://obofoundry.org/obo/CL:0000718 CL:0000718] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== anterior cone cell (sensu Endopterygota) == | == anterior cone cell (sensu Endopterygota) == | ||
| − | + | anterior cone cell (sensu Endopterygota) [http://obofoundry.org/obo/CL:0000720 CL:0000720] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== posterior cone cell (sensu Endopterygota) == | == posterior cone cell (sensu Endopterygota) == | ||
| − | + | posterior cone cell (sensu Endopterygota) [http://obofoundry.org/obo/CL:0000719 CL:0000719] | |
* Alex: Y | * Alex: Y | ||
| + | |||
== equatorial cone cell (sensu Endopterygota) == | == equatorial cone cell (sensu Endopterygota) == | ||
| − | + | equatorial cone cell (sensu Endopterygota) [http://obofoundry.org/obo/CL:0000721 CL:0000721] | |
* Alex: Y | * Alex: Y | ||
| + | |||
| + | = Disjointness violations = | ||
| + | |||
| + | == Prok/Euk == | ||
| + | |||
| + | Adding a disjoint_from axiom between prokaryotic cell and eukaryotic cell. Remove is_a parentage of all violators (eg spore) | ||
| + | |||
| + | * Chris: Y | ||
Latest revision as of 12:16, 17 February 2009
Name Changes
cell by organism
cell by organism CL:0000004 becomes cell by phylum
- Alex: Y
macrophage (sensu Diptera)
macrophage (sensu Diptera) CL:0000401 becomes dipeteran macrophage
- Alex: Y
macrophage (CL:0000235) becomes vertebrate macrophage Y
phagocyte (sensu Vertebrata)
phagocyte (sensu Vertebrata) CL:0000518 becomes vertebrate macrophage
- Alex: Y
phagocyte (sensu Nematoda and Protostomia) becomes invertebrate phagocyte Y
cardiac muscle cell (sensu Arthopoda) becomes cardioblast-derived cardiac muscle cell Y
epidermal cell (sensu Insecta)– becomess epidemioblast-derived epidermal cell Y
podocyte (sensu Diptera)
podocyte (sensu Diptera) CL:0000391 becomes Dipteran podocyte
- Alex: Y
podocyte
podocyte CL:0000653 becomes vertebrate podocyte
- Alex: Y
glioblast (sensu Nematoda and Protostomia)
glioblast (sensu Nematoda and Protostomia) CL:? becomes invertebrate glioblast
- Alex: Y
glioblast (sensu Vertebrata)
glioblast (sensu Vertebrata) CL:0000339 becomes vertbrate glioblast
- Alex: Y
glial cell (sensu Nematoda and Protostomia) )
glial cell (sensu Nematoda and Protostomia) ) CL:? becomes invertebrate glial cell
- Alex: Y
glial cell (sensu Vertebrata) )
glial cell (sensu Vertebrata) ) CL:? becomes invertebrate glial cell
- Alex: Y
neuron associated cell (sensu Nematoda and Protostomia) )
neuron associated cell (sensu Nematoda and Protostomia) ) CL:? becomes invertebrate NAS
- Alex: Y
neuron associated cell (sensu Vertebrata) )
neuron associated cell (sensu Vertebrata) ) CL:? becomes vertebrate NAS
- Alex: Y
extraembryonic cell/ germ line stem cell )
extraembryonic cell/ germ line stem cell ) CL:? replaced with EEC/primordial germ cell
- Alex: Y
Obsoletions/Merges
cardioblast (sensu Arthropoda)
cardioblast (sensu Arthropoda) CL:0000465
- Alex: Y
blood cell (sensu Nematoda and Protostomia)
blood cell (sensu Nematoda and Protostomia) CL:0000390
- Alex: Y
hemocyte (sensu Nematoda and Protostomia)
hemocyte (sensu Nematoda and Protostomia) CL:0000387
- Alex: Y
prohemocyte (sensu Nematoda and Protostomia)
prohemocyte (sensu Nematoda and Protostomia) CL:0000385
- Alex: Y
chemotactic amoeboid cell (sensu Mycetozoa)
chemotactic amoeboid cell (sensu Mycetozoa) CL:0000289
- Alex: Y
prohemocyte (sensu Nematoda and Protostomia)
prohemocyte (sensu Nematoda and Protostomia) CL:0000385
- Alex: Y
chemotactic amoeboid cell (sensu Mycetozoa)
chemotactic amoeboid cell (sensu Mycetozoa) CL:0000289
- Alex: Y
Distal tip cell (sensu nematoda) –
Distal tip cell (sensu nematoda) – CL:0000422
- Alex: Y
pigment cell (sensu Nematoda and Protostomia)
pigment cell (sensu Nematoda and Protostomia) CL:0000341
- Alex: Y maybe, but it would be great to get a definition for pigment cell
pigment cell (sensu Vertebrata)
pigment cell (sensu Vertebrata) CL:0000342
- Alex: Y
visual pigment cell (sensu Nematoda & Protostomia)
visual pigment cell (sensu Nematoda & Protostomia) CL:0001658
- Alex: Mycetozoa Y
visual pigment cell (sensu Vertebrata)
visual pigment cell (sensu Vertebrata) CL:0000343
- Alex: Y
non-visual cell (sensu Vertebrata)
non-visual cell (sensu Vertebrata) CL:0000344
- Alex: Y
receptor cell (sensu Animalia)
receptor cell (sensu Animalia) CL:0000006
- Alex: Y
sperm cell (sensu Viridiplantae)
sperm cell (sensu Viridiplantae) CL:0000366
- Alex: Y
spore (sensu Mycetozoa)
spore (sensu Mycetozoa) CL:000029
- Alex: N, see my email discussion
vegetative cell
vegetative cell CL:0000296
- Alex: N, no true commonalities here
vegetative cell (sensu Fungi)
vegetative cell (sensu Fungi) CL:0000334
- Alex: N, no true commonalities here
vegetative cell (sensu Mycetozoa)
vegetative cell (sensu Mycetozoa) CL:0000263
- Alex: N, no true commonalities here
CNS neuron (sensu Nematoda and Protostomia)
CNS neuron (sensu Nematoda and Protostomia) CL:0000028
- Alex: Y
CNS neuron (sensu Vertebrata)
CNS neuron (sensu Vertebrata) CL:0000117
- Alex: Y
neuroblast (sensu Nematoda and Protostomia) Y
neuroblast (sensu Vertebrata)
neuroblast (sensu Vertebrata) CL:0000337
- Alex: Y
neuroglioblast (sensu Nematoda)
neuroglioblast (sensu Nematoda) CL:0000662
- Alex: Y
support cell (sensu Nematoda and Protostomia)
support cell (sensu Nematoda and Protostomia) CL:0000378
- Alex: Y
support cell (sensu Nematoda)
support cell (sensu Nematoda) CL:0000619
- Alex: Y
female germ line stem cell (sensu Nematoda and Protostomia)
female germ line stem cell (sensu Nematoda and Protostomia) CL:0000088
- Alex: Y
female germ line stem cell (sensu Vertebrata)
female germ line stem cell (sensu Vertebrata) CL:0000090
- Alex: Y
germ line stem cell (sensu Nematoda and Protostomia)
germ line stem cell (sensu Nematoda and Protostomia) CL:0000086
- Alex: Y
germ line stem cell (sensu Vertebrata)
germ line stem cell (sensu Vertebrata) CL:0000085
- Alex: Y
male germ line stem cell (sensu Nematoda and Protostomia)
male germ line stem cell (sensu Nematoda and Protostomia) CL:0000087
- Alex: Y
male germ line stem cell (sensu Vertebrata)
male germ line stem cell (sensu Vertebrata) CL:0000089
- Alex: Y
male germ line stem cell
male germ line stem cell CL:0000016
- Alex: Y
Cone bipolar cells types 1-9 (sensu mouse) )
Cone bipolar cells types 1-9 (sensu mouse) ) CL:?
- Alex: Y
cone cell (sensu Endopterygota)
cone cell (sensu Endopterygota) CL:0000718
- Alex: Y
anterior cone cell (sensu Endopterygota)
anterior cone cell (sensu Endopterygota) CL:0000720
- Alex: Y
posterior cone cell (sensu Endopterygota)
posterior cone cell (sensu Endopterygota) CL:0000719
- Alex: Y
equatorial cone cell (sensu Endopterygota)
equatorial cone cell (sensu Endopterygota) CL:0000721
- Alex: Y
Disjointness violations
Prok/Euk
Adding a disjoint_from axiom between prokaryotic cell and eukaryotic cell. Remove is_a parentage of all violators (eg spore)
- Chris: Y