Difference between revisions of "Tutorials and Classes"
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| − | + | ==Logistics and Registration == | |
| − | + | '''Logistics''' details, including room locations, are available [[Logistics: Tutorials and Classes | here]]. | |
| + | A '''registration form''' is available [http://icbo.buffalo.edu/Tutorials_and_Classes.pdf here]. Please note that pre-registration for tutorials and classes is compulsory. | ||
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| + | Tutorials and classes are co-located with the [http://icbo.buffalo.edu International Conference on Biomedical Ontology]. | ||
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==Half-Day Tutorials== | ==Half-Day Tutorials== | ||
| + | Morning sessions are from 9am to 12.30pm. Afternoon sessions are from 1.30pm to 5pm. | ||
'''July 20: Morning''' | '''July 20: Morning''' | ||
| − | + | Fabian Neuhaus (NIST): [http://www.bioontology.org/wiki/index.php/Neuhaus Formal Methods for Biologists]; also offered as part of 2-day class on [http://www.bioontology.org/wiki/index.php/Bittner_and_Donnelly Spatial Ontology and Qualitative Reasoning] | |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus] | ||
'''July 20: Afternoon''' | '''July 20: Afternoon''' | ||
| − | + | Mathias Brochhausen (IFOMIS): [[The Ontology of Paleobiology]] | |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Brochhausen.ppt Brochhausen] | ||
'''July 21: Morning''' | '''July 21: Morning''' | ||
| − | + | Colin Batchelor (Royal Society of Chemistry): [[An Introduction to Chemistry Ontology]] | |
| − | + | *Slides: [http://icbo.buffalo.edu/presentations/Batchelor.ppt Batchelor] | |
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'''July 22: Morning''' | '''July 22: Morning''' | ||
| − | + | Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] | |
| + | *[http://icbo.buffalo.edu/presentations/Smith.ppt Slides: Smith]; [http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video] | ||
'''July 22: Afternoon''' | '''July 22: Afternoon''' | ||
| − | + | Olivier Bodenreider (National Library of Medicine): [[An Introduction to Biomedical Ontology]] | |
| − | *Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] | + | *Slides: [http://mor.nlm.nih.gov/pubs/pres/090722-ICBO-tutorial.pdf Bodenreider] |
| + | Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] | ||
| + | *[http://icbo.buffalo.edu/presentations//Ceusters.ppt Slides: Ceusters]; [http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video] | ||
'''July 23: Morning''' | '''July 23: Morning''' | ||
| − | + | Natasha Noy (Stanford University) [[Using_WebProtege_and_NCBO_BioPortal | Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies]] | |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Noy.pdf Noy] | ||
'''July 23: Afternoon''' | '''July 23: Afternoon''' | ||
| − | + | David Osumi-Sutherland (Flybase / Gene Ontology Consortium): [[OBO-Edit | The OBO-Edit Ontology Developer's Environment: A Practical Introduction]] | |
| + | *Slides: [http://www.bioontology.org/wiki/index.php/OBO-Edit Osumi-Sutherland] | ||
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==Two-Day Classes== | ==Two-Day Classes== | ||
| + | Classes meet from 9am to 5pm, with lunch from 12.30 to 1.30pm. | ||
'''July 20-21''' | '''July 20-21''' | ||
| − | Randall Dipert and Neil Williams (Buffalo): [[The Ontology of Events, Powers and Dispositions]] | + | Randall Dipert and Neil Williams (Buffalo): [[The Ontology of Events, Powers and Dispositions]] |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Dipert.pdf Dipert] | ||
| − | Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): [[Bittner_Donnelly_and_Neuhaus | Spatial Ontology and Qualitative Reasoning]] | + | Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): [[Bittner_Donnelly_and_Neuhaus | Spatial Ontology and Qualitative Reasoning]] |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus] [http://icbo.buffalo.edu/presentations/Donnelly.pdf Donnelly] | ||
'''July 22-23''' | '''July 22-23''' | ||
| − | Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] | + | Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] |
| + | *[http://icbo.buffalo.edu/presentations/Smith.ppt Slides: Smith] [http://icbo.buffalo.edu/presentations/Ceusters.ppt Ceusters] [http://icbo.buffalo.edu/presentations/Ruttenberg.pdf Ruttenberg] | ||
| + | *[http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video] | ||
David Hershenov (Buffalo): [[Metaphysical Foundations of Biomedical Ethics]] | David Hershenov (Buffalo): [[Metaphysical Foundations of Biomedical Ethics]] | ||
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Latest revision as of 07:44, 27 December 2009
Logistics and Registration
Logistics details, including room locations, are available here.
A registration form is available here. Please note that pre-registration for tutorials and classes is compulsory.
Tutorials and classes are co-located with the International Conference on Biomedical Ontology.
Half-Day Tutorials
Morning sessions are from 9am to 12.30pm. Afternoon sessions are from 1.30pm to 5pm.
July 20: Morning
Fabian Neuhaus (NIST): Formal Methods for Biologists; also offered as part of 2-day class on Spatial Ontology and Qualitative Reasoning
- Slides: Neuhaus
July 20: Afternoon
Mathias Brochhausen (IFOMIS): The Ontology of Paleobiology
- Slides: Brochhausen
July 21: Morning
Colin Batchelor (Royal Society of Chemistry): An Introduction to Chemistry Ontology
- Slides: Batchelor
July 22: Morning Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology
July 22: Afternoon
Olivier Bodenreider (National Library of Medicine): An Introduction to Biomedical Ontology
- Slides: Bodenreider
Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology
July 23: Morning
Natasha Noy (Stanford University) Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies
- Slides: Noy
July 23: Afternoon
David Osumi-Sutherland (Flybase / Gene Ontology Consortium): The OBO-Edit Ontology Developer's Environment: A Practical Introduction
- Slides: Osumi-Sutherland
Two-Day Classes
Classes meet from 9am to 5pm, with lunch from 12.30 to 1.30pm.
July 20-21
Randall Dipert and Neil Williams (Buffalo): The Ontology of Events, Powers and Dispositions
- Slides: Dipert
Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): Spatial Ontology and Qualitative Reasoning
July 22-23
Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): From Basic Formal Ontology to the Information Artifact Ontology
David Hershenov (Buffalo): Metaphysical Foundations of Biomedical Ethics