Difference between revisions of "Meetings and Events"

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== NCBO-Sponsored Dissemination and Training Events 2005-2009 ==
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== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==
  
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'''The Future of the Foundational Model of Anatomy [http://groups.google.com/group/fma-owl-2009/web/agenda?hl=en ↑] '''  
+
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 2015
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014
 +
 
 +
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''
 +
*Georgetown, DC, June 18-19, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''
 +
*Buffalo, NY, June 23, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''
 +
*Buffalo, NY, June 24-25, 2014.
 +
 
 +
'''[[NCBO Hackathon 2013]]'''
 +
* Stanford University, Stanford, CA, April 29-30, 2013
 +
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''
 +
 
 +
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''
 +
*Buffalo, NY, May 15-16, 2013
 +
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''
 +
*Orlando, FL, February 11-12, 2013
 +
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.
 +
 
 +
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''
 +
* Paris, November 29, 2012
 +
 
 +
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''
 +
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.
 +
 
 +
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''
 +
*November 8-9, 2012
 +
 
 +
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''
 +
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012
 +
 
 +
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012
 +
* NCBO Web services: Powering Semantically Aware Applications
 +
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.
 +
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''
 +
 
 +
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]
 +
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,
 +
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]
 +
 
 +
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]
 +
* Buffalo, NY, June 11-13, 2012.
 +
 
 +
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''
 +
*Baltimore, MD, April 24, 2012.
 +
 
 +
'''[[Clinical and Translational Science Ontology Workshop]]'''
 +
*Baltimore, MD, April 25-26, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies and Their Applications]]'''
 +
*Stanford University, CA, March 15, 2012.
 +
 
 +
'''[[AMIA CRI Demo]]'''
 +
*San Francisco, CA, March 22, 2012.
 +
 
 +
'''[[NCBO Hackathon]]'''
 +
*Stanford University, CA, March 26-27, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies]]'''
 +
*New York Botanical Gardens, Bronx, NY, February 5, 2012.
 +
 
 +
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications
 +
*London, UK, December 7-9, 2011
 +
 
 +
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''
 +
*Kyoto, Japan, August 22-26, 2011
 +
 
 +
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]'''
 +
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]
 +
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.
 +
 
 +
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] '''
 +
*Atlanta, GA, June 29, 2011.
 +
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]
 +
 
 +
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''
 +
*San Diego, CA, March 16-19, 2011.
 +
 
 +
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''
 +
*Baltimore, MD, December 8-9, 2010.
 +
 
 +
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''
 +
*Tutorial, University at Buffalo, October 23, 2010.
 +
 
 +
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''
 +
*September 9-15, 2010, Cape Town, South Africa,
 +
 
 +
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''
 +
*June 26-27, 2010, Stanford, CA.
 +
 
 +
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]'''
 +
*Toronto, Canada, May 11-14, 2010.
 +
 
 +
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''
 +
*March 15-16, 2010, NIST, Gaithersburg, MD
 +
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
 +
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]
 +
 
 +
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''
 +
*February 26-28, 2010, Keio University, Tokyo, Japan
 +
*Conference co-sponsored with the Japanese Center for Ontological Research
 +
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.
 +
 
 +
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''
 +
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK
 +
 
 +
'''[[The Future of the Foundational Model of Anatomy]]'''  
 
*November 11-12, 2009, Stanford, CA
 
*November 11-12, 2009, Stanford, CA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]
  
−
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]
+
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''
 
*October 10-11, 2009, Buffalo, NY
 
*October 10-11, 2009, Buffalo, NY
 
*Co-sponsored with the University at Buffalo
 
*Co-sponsored with the University at Buffalo
 +
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]
  
−
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]  
+
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''
 
*September 3-4, 2009, University of Milan, Biccaca, Italy
 
*September 3-4, 2009, University of Milan, Biccaca, Italy
−
*Co-sponsored by the Italian National Research Council
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*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
 +
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]
  
−
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu ↑]'''
+
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''
 
*July 27-29, 2009, Buffalo, NY  
 
*July 27-29, 2009, Buffalo, NY  
 
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 +
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]
 +
 +
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''
 +
*July 25-26, 2009, Buffalo, NY
 +
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
 +
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]
  
 
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]'''  
 
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]'''  
 
*Mar 30-Apr 1, 2009, Miami, FL
 
*Mar 30-Apr 1, 2009, Miami, FL
 
*Co-sponsored by the International Association for Dental Research
 
*Co-sponsored by the International Association for Dental Research
 +
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"]
  
−
'''InterOntology 2009 [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]'''  
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]'''  
−
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan
+
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
−
*Special session on Biomedical Ontologies co-organized with the Japanese Center for Ontological Research  
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*Co-organized with the Japanese Center for Ontological Research  
  
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]'''  
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]'''  
−
*January 5, 2009, Boston, MA  
+
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 +
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]
  
 
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''
 
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''
 
*September 3-4, 2008, Dallas, TX
 
*September 3-4, 2008, Dallas, TX
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]
  
−
'''[[How_to_Make_Useful_Ontologies_for_Biomedicine | How to Make Useful Ontologies for Biomedicine]]'''
+
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''
 
*July 19, 2008, Toronto, Canada.
 
*July 19, 2008, Toronto, Canada.
 
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
 
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
 +
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]
  
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''
 
*June 20, 2008, Minneapolis, MN
 
*June 20, 2008, Minneapolis, MN
−
*Held in conjunction with the [http://www.cce.umn.edu/conferences/evolution/ ↑] Evolution 2008 meeting.
+
*Held in conjunction with the Evolution 2008 meeting.
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 +
*[http://kaboodle.nescent.org/?q=node/58 Report]
 +
 +
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''
 +
*May 19-20, 2008, Denver, CO
 +
*NCBO Dissemination Workshop
  
 
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''
 
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''
 
*April 12-13, 2008, Buffalo, NY
 
*April 12-13, 2008, Buffalo, NY
 
*NCBO Tutorial (Faculty: Barry Smith)
 
*NCBO Tutorial (Faculty: Barry Smith)
 +
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]
  
 
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]'''  
 
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]'''  
 
*March 27-28, 2008, Newark, NJ
 
*March 27-28, 2008, Newark, NJ
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]
  
−
'''Joint JCOR-NCBO International Biomedical Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''
−
*February 26-27, 2008, Tokyo, Japan
+
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]
−
*NCBO Dissemination Workshop
+
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research
−
*Co-sponsored with the Japanese Center for Ontological Research  
 
  
−
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 http://www.dagstuhl.de/07301 ↑]'''
+
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''
 
*July 23-27, 2007: Schloss Dagstuhl, Germany
 
*July 23-27, 2007: Schloss Dagstuhl, Germany
 
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 +
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]
  
 
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''
 
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''
Line 67: Line 203:
 
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
 
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
  
−
'''Workshop on Clinical Trial Ontology'''
+
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''
−
*May 16-17 2007, venue TBD
+
*June 12-13th, 2007, University of Utah, Salt Lake City, UT
−
*[[Workshop on Clinical Trial Ontology | Information about Clinical Trial Ontology workshop]]
 
−
*'''NCBO Dissemination Workshop'''
 
  
−
'''[http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑] Dagstuhl Seminar: Ontology Interoperability in Biomedicine]'''
+
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''
 +
*May 16-17 2007, NIH Campus, Bethesda, MD
 +
*NCBO Dissemination Workshop
 +
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]
 +
 
 +
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''
 
*March 27-30, 2007, Dagstuhl, Germany
 
*March 27-30, 2007, Dagstuhl, Germany
−
*Attending: Barry Smith, Michael Ashburner, Mark Musen, Nigam Shah, Fabian Neuhaus, Suzanna Lewis, Werner Ceusters
+
*NCBO Dissemination Workshop
−
*'''NCBO Dissemination Workshop'''
+
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report]
  
−
'''Ontolog Forum Talk''' by Barry Smith on [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑]  
+
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑]  
−
Ontology Evaluation in Biomedicine]: The OBO Foundry -- A Gold Standard Approach to Ontology Evaluation.
+
*December 21, 2006  
−
*'''December 21, 2006'''
+
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]
−
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides]  
 
−
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]
 
  
−
'''Phenotype Ontology'''
+
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]
 
*December 1-2, 2006, Clark Center, Stanford, CA
 
*December 1-2, 2006, Clark Center, Stanford, CA
−
*[[PATO_Meeting| PATO meeting agenda]]
 
−
*Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
 
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
  
−
'''Connecting BioPAX to Other Biomedical Ontologies [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ↑]'''  
+
'''Connecting BioPAX to Other Biomedical Ontologies'''  
 
*November 20-21, 2006, MIT, Boston, MA
 
*November 20-21, 2006, MIT, Boston, MA
−
*NCBO Tutorial (Faculty: Barry Smith
+
*NCBO Tutorial (Faculty: Barry Smith)
  
 
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''
 
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''
−
* AMIA Anual Symposium, November 14, 2006, Washington DC
+
*AMIA Anual Symposium, November 14, 2006, Washington DC
−
*Presenter: Barry Smith and others
+
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]
  
 
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ↑]'''
 
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ↑]'''
Line 102: Line 237:
  
 
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''
 
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''
−
*November 11, 2006, AMIA Annual Symposium, Washington DC
+
*AMIA Annual Symposium, November 11, 2006, Washington DC,
−
*NCBO Dissemination Workshop
+
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]
  
 
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''
 
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''
 
*November 8, 2006, Baltimore, MD
 
*November 8, 2006, Baltimore, MD
 
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 +
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication]
  
 
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''
 
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''
 
*November 6-7, 2006, John Hopkins University, Baltimore
 
*November 6-7, 2006, John Hopkins University, Baltimore
−
*NCBO Dissemination Workshop organized in association with Formal Ontology and Information Systems ([http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] Conference
+
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference
  
−
'''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ↑]'''
+
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]'''  
−
*October 14-15, 2006, Buffalo, NY
+
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
−
*'''NCBO Dissemination Workshop'''
+
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
  
−
'''American Society of Human Genetics [http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml ↑] '''
+
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''
−
*October 9-13, 2006, New Orleans, LA
+
*September 8-9, 2006, University of Washington, Seattle, WA
−
*]
+
*NCBO Dissemination Workshop
−
*Presentation to find collaborators, also ontology workshop
+
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology]
  
−
'''Genomics Standards Consortium Workshop
+
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]
−
**National Institute for Environmental e-Science (NIEeS)
+
*August 27, 2006, Maastricht, Netherlands.
−
**September 11-13, 2006, Hinxton, UK.
+
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters)
−
** [http://www.niees.ac.uk/events/egenomics2006/index.shtml http://www.niees.ac.uk/events/egenomics2006/index.shtml]
+
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]
−
**Attending: Suzanna Lewis, Michael Ashburner, George Gkoutos
 
  
−
'''Anatomy Ontology Workshop'''
+
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''
−
**September 8-9, 2006, Seattle
+
*August 14-18, 2006.  Stanford University
−
**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
+
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)
−
**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield   
 
−
*'''NCBO Dissemination Workshop'''
 
  
−
'''Tutorial on Standards and Ontologies
+
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"
−
**Medical Informatics Europe
+
*Jul 30-August 4, 2006, Fortaleza, Brazil.
−
**August 27, 2006, Maastricht, Netherlands.
+
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.
−
**http://ontology.buffalo.edu/06/MIE_Tutorial.htm
 
−
**Attending: Werner Ceusters, Barry Smith
 
  
−
'''IEEE Computational Systems Bioinformatics, 2006'''
+
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''.
−
**August 14-18, 2006.  Stanford University
+
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
−
**[http://www.lifesciencessociety.org/CSB2006/index.html http://www.lifesciencessociety.org/CSB2006/index.html]
+
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;
−
** Attending: Mark Musen (Keynote), rest of Stanford group (tutorial in bioontologies/semantic web)
 
  
−
'''ISMB, 2006'''
+
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''
−
**August 6-10, 2006, Fortaleza, Brazil.
+
*July 23-26, 2006, Stanford, CA
−
** [http://ismb2006.cbi.cnptia.embrapa.br/ http://ismb2006.cbi.cnptia.embrapa.br/]
+
*NCBO Tutorial (Faculty: Chris Callendar)
−
** Attending: Michael Ashburner, Suzanna Lewis (Keynote speaker for Bio-ontologies SIG)
 
  
−
'''In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot'''
+
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''
−
**Jul 30- August 4, 2006, Fortaleza, Brazil.
+
*July 17-19, 2006, NIH, Bethesda, MD
−
** [http://www.swissprot20.org/ http://www.swissprot20.org/]
+
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
−
** Attending: Michael Ashburner, Suzanna Lewis
 
  
−
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop'''
+
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''
−
**July 24-28, 2006, Hinxton, UK
+
*July 19, 2006, NIH, Bethesda, MD
−
**http://fugo.sourceforge.net/news/index.php
+
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
−
**Attending: Barry Smith
+
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]
 +
 +
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''
 +
*May 21-24, 2006, Schloss Dagstuhl, Germany
 +
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
  
−
'''9th International Protege Conference'''
+
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''
−
**July 23-26, 2006, Stanford, CA
+
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
−
**[http://protege.stanford.edu/conference/2006/ http://protege.stanford.edu/conference/2006/]
+
*NCBO Dissemination Workshop
−
** Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar
 
  
−
'''NCBC All Hands Meeting'''
+
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''
−
**July 17-19, 2006, NIH, Bethesda, MD
+
*March 31-April 3, 2006, St. Croix
−
**Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield 
+
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]
−
**[http://www.bisti.nih.gov/ahm2006/ http://www.bisti.nih.gov/ahm2006/]
+
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication]  
−
**[http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm Ontology: A Vision for the Future and Its Realization] Dissemination Event
 
−
***Organizers: Mark Musen, Barry Smith
 
  
−
'''Core 1 & 2 Project Meeting'''
+
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''
−
** June 27-28, 2006, Berkeley, CA
+
*March 24-25, 2006, Stanford, CA
−
** Attending:  Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall,  ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute,  Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
+
*NCBO Dissemination Workshop
−
** Working plan for core 1 & 2 goals
+
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology  
−
 
+
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]
−
'''Core 1 & 2 Meeting'''
 
−
** June 9, 2006, Berkeley, CA
 
−
** Attending:  Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)
 
−
 
 
−
'''Training Course in Biomedical Ontologies'''
 
−
**[http://ontology.buffalo.edu/06/os2/index.html http://ontology.buffalo.edu/06/os2/index.html]
 
−
**May 21-24, 2006, Schloss Dagstuhl, Germany
 
−
**Attending: Werner Ceusters, Mark Musen, Barry Smith
 
−
***'''NCBO'''
 
−
 
 
−
'''NSF/RCN workshop on ontology and phylogeny'''
 
−
**May 21-24, 2006, St. Louis, MO
 
−
**Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
 
−
 
 
−
'''Phenotype Annotation Meeting'''
 
−
**May 17-20, 2006, Hinxton, UK
 
−
**Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
 
−
**[[Agenda PaTO | PATO meeting agenda]]
 
−
 
 
−
'''Fish Evolutionary Biology Working Group Meeting'''
 
−
**April 9-11, 2006, National Evolutionary Synthesis Center (NESCent), Durham, NC
 
−
**Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield
 
−
 
 
−
'''Gene Ontology Workshop'''
 
−
**March 31-April 3, 2006, St. Croix
 
−
**Tutorial by Barry Smith
 
−
 
 
−
'''Bio-IT LifeSciences Conference'''
 
−
**April 3-6, 2006, Boston, MA'''
 
−
**[http://www.lifesciencesexpo.com/live/26/ http://www.lifesciencesexpo.com/live/26/]
 
−
** Speaker: Michael Ashburner, Ben Franklin Award Lecture.
 
−
 
 
−
'''Workshop on Ontology of Images'''
 
−
**March 24-25, 2006, Stanford, CA
 
−
**[http://www.loni.ucla.edu/CCB/ CCB NCBC] and others with biomedical image ontologies
 
−
**[Workshop on Ontology of Images | info on Ontology of Images workshop]
 
−
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
 
−
*'''NCBO Dissemination Workshop'''
 
−
 
 
−
'''Immunology Ontology Workshop: NIAID'''
 
−
**March 21-22, 2006, Gaitherburg, MD
 
−
** Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
 
−
 
 
−
'''Semantic Technology Conference'''
 
−
**March 6-9, 2006, San Jose, CA
 
−
** [http://www.semantic-conference.com/ http://www.semantic-conference.com/ ]
 
−
** Attending:  Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)
 
  
−
'''NIH NCRR Animal Models workshop'''
+
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''
−
**March 6-7, 2006, Bethesda, MD
+
*March 21-22, 2006, Gaitherburg, MD
−
** Attending: Monte Westerfield
+
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
 +
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]
  
−
'''[[Minutes & presentations, March 2-4, 2006 Project meeting|cBio Project Meeting]]'''
+
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''
−
**March 2-4, 2006, Stanford, CA
+
*March 6-7, 2006, Bethesda, MD
−
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
+
*Presentation by Monte Westerfield on Animal Models and Ontologies
−
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html http://www.smi.stanford.edu/research/cbio/cbio_meeting.html]
 
−
**Entire project, NIH Program & Lead Science officers
 
  
 
'''BIRN ontology workshop'''
 
'''BIRN ontology workshop'''
−
**February 28-March 1, 2006, Stanford, CA
+
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]
−
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
+
*February 28-March 1, 2006, Stanford, CA
−
*'''NCBO Dissemination Workshop'''
+
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]
−
 
+
*NCBO Dissemination Workshop
−
'''NLM vocabulary collection and distribution meeting'''
+
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology
−
**February 27-28, 2006, NLM, Washington, DC
 
−
** Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig
 
−
 
 
−
'''NIAID meeting'''
 
−
**February, 2006, Washington, DC
 
−
**Attending: Mark Musen
 
−
 
 
−
'''cBio Phenotype Annotation tool specification'''
 
−
**February 21-23, 2006, Berkeley, CA
 
−
** Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)
 
−
 
 
−
'''Mini-Syposium on Semantic Enrichment of Scientific Literature'''
 
−
**February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
 
−
**Attending: Michael Ashburner (speaker)
 
−
 
 
−
'''cBio OBD specification'''
 
−
**February 17, 2006, Berkeley, CA
 
−
** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
 
−
 
 
−
'''FuGO meeting'''
 
−
** February 13-15, 2006, Philadelphia, PA
 
−
**[http://fugo.sourceforge.net/news/index.php http://fugo.sourceforge.net/news/index.php]
 
−
**Attending: Barry Smith
 
−
 
 
−
'''Fourth Semantic Interoperability for E-Government Conference'''
 
−
** February 9-10, 2006, MITRE, McLean, VA
 
−
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
 
−
**Attending: Barry Smith
 
−
 
 
−
'''NIAID BRC3 and Inter Operability Working Group meeting'''
 
−
** February 6-7, 2006,  Philadelphia, PA
 
−
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm]
 
−
** Attending: Suzanna Lewis, Barry Smith
 
−
 
 
−
'''PharmGKB and cBiO meeting'''
 
−
** January 31, 2006, Stanford, CA
 
−
** Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)
 
−
 
 
−
'''Pacific Symposium on Biocomputing, 2006'''
 
−
**January 2-6, 2006, Maui, HI
 
−
**Michael Ashburner (Keynote)
 
−
**[http://psb.stanford.edu/ http://psb.stanford.edu/]
 
−
 
 
−
'''NCBC Meeting'''
 
−
**Dec. 15-16, NIH, Bethesda, MD
 
−
**Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
 
−
**Introducting new NCBCs to each other and NIH staff
 
−
 
 
−
'''Phenotype Annotation Meeting'''
 
−
**December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
 
−
** Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
 
−
** Define requirements of phenotype annotation tools
 
−
 
 
−
'''International Biocurator Meeting'''
 
−
**December 8-11, 2005, Asilomar, CA
 
−
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
 
−
**Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)
 
−
 
 
−
'''National Bioinformatics Network, South Africa'''
 
−
**December 2, 2005, University of Cape Town, SA
 
−
**Michael Ashburner (Keynote)
 
−
 
−
'''Phenotype Ontology Content Workshop'''
 
−
**Nov. 19-20, 2005, Cold Spring Harbor, NY
 
−
** Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
 
−
** [[Media:PhenoAgenda.doc]]
 
−
 
 
−
'''Stanford/Mayo/Berkeley Meetings'''
 
−
**Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
 
−
** Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam,  (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
 
−
 
 
−
'''Forbes Dewey Meeting'''
 
−
**Late October, MIT, Cambridge, MA
 
−
**Michael Ashburner, chair
 
−
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
 
  
−
'''Genome Informatics Meeting'''
+
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''
−
**Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
+
*February 13-15, 2006, Philadelphia, PA
−
**Suzanna Lewis (organizer, speaker)
+
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]
  
−
'''Workshop on Bio-Ontologies'''
+
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]
−
**October 28, 2005, Buffalo, NY
+
*December 8-11, 2005, Asilomar, CA
−
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf]
+
*Attending: Sima Misra, Chris Mungall, Monte Westerfield
−
**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
−
**Training session: making ontologies better
 
−
***'''NCBO'''
 
  
−
'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
+
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑]
−
**October, 2005, Caxambu, Brazil
+
*Nov. 19-20, 2005, Cold Spring Harbor, NY
−
**Michael Ashburner (Keynote)
+
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
  
−
'''Applied Biosystems Inc., Science Meeting'''
+
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''  
−
**September, 2005, Asilomar, CA
+
*October 28, 2005, Buffalo, NY
−
**Michael Ashburner (Keynote)
+
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider
  
−
'''MGED8, Bergen'''
+
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''  
−
**September, 2005
+
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)
−
**Michael Ashburner (Keynote)
+
*October 28, 2005, Buffalo, NY
 +
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]

Latest revision as of 11:59, 19 October 2018

NCBO-Sponsored Dissemination and Training Events 2005-2015

International Conference on Biomedical Ontology, Lisbon, July 27-30, 2015

The Role of Ontology in Big Cancer Data, National Cancer Institute, Bethesda, MD, May 12-13, 2015

Information Artifact Ontologies, Workshop organized as part of FOIS, Rio de Janeiro, Brazil, September 22, 2014

5th International Conference on Biomedical Ontologies (ICBO 2014), Houston, TX, October 6-9, 2014

Protein Ontology Workshop

  • Georgetown, DC, June 18-19, 2014

Tutorial on Ontology for Image Informatics

  • Buffalo, NY, June 23, 2014

Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop

  • Buffalo, NY, June 24-25, 2014.

NCBO Hackathon 2013

PRO-PO-GO Meeting: Challenges of Ontology Coordination Across Organisms

  • Buffalo, NY, May 15-16, 2013
  • The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.

Second CTSA Ontology Workshop

  • Orlando, FL, February 11-12, 2013
  • This is the second meeting of the new IKFC Clinical and Translational Science Ontology Affinity Group which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.

SWAT4LS2012 Tutorial

  • Paris, November 29, 2012

Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities

  • AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.

Overview Presentation for the NCBC Showcase

  • November 8-9, 2012

Course on Anatomy Ontologies

Bio-Ontologies 2012 Long Beach, CA July 13-14, 2012

  • NCBO Web services: Powering Semantically Aware Applications

International Conference on Biomedical Ontology, Graz, Austria, July 21-25, 2012.

Semantics of Biodiversity

Immunology Ontologies and Their Applications in Processing Clinical Data

  • Buffalo, NY, June 11-13, 2012.

CTSA Ontology Tutorial

  • Baltimore, MD, April 24, 2012.

Clinical and Translational Science Ontology Workshop

  • Baltimore, MD, April 25-26, 2012.

Introduction to Bio-Ontologies and Their Applications

  • Stanford University, CA, March 15, 2012.

AMIA CRI Demo

  • San Francisco, CA, March 22, 2012.

NCBO Hackathon

  • Stanford University, CA, March 26-27, 2012.

Introduction to Bio-Ontologies

  • New York Botanical Gardens, Bronx, NY, February 5, 2012.

SWAT4LS Tutorial: NCBO Web Services and Development of Semantic Applications

  • London, UK, December 7-9, 2011

DBCLS Hackathon

  • Kyoto, Japan, August 22-26, 2011

2nd International Conference on Biomedical Ontology ICBO ↑

  • Videos of all presentations and discussions are available here
  • Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.

How to Build a Biomedical Ontology ↑

The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research ↑

  • San Diego, CA, March 16-19, 2011.

Infectious Disease Ontology Dissemination Workshop ↑

  • Baltimore, MD, December 8-9, 2010.

Introduction to Ontology Building ↑

  • Tutorial, University at Buffalo, October 23, 2010.

Medinfo Workshop on Infectious Disease Ontology↑

  • September 9-15, 2010, Cape Town, South Africa,

W3C Workshop – RDF Next Steps↑

  • June 26-27, 2010, Stanford, CA.

Formal Ontology in Information Systems ↑

  • Toronto, Canada, May 11-14, 2010.

Ontology Summit 2010: Creating the Ontologists of the Future ↑

  • March 15-16, 2010, NIST, Gaithersburg, MD
  • Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
  • Communique

3rd Interdisciplinary Ontology Conference ↑

  • February 26-28, 2010, Keio University, Tokyo, Japan
  • Conference co-sponsored with the Japanese Center for Ontological Research
  • Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.

Ontologies for the Virtual Physiological Human ↑

  • February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK

The Future of the Foundational Model of Anatomy

From Aristotle to the Universal Core: Ontology Training Event ↑

  • October 10-11, 2009, Buffalo, NY
  • Co-sponsored with the University at Buffalo
  • Webcast

Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes ↑

  • September 3-4, 2009, University of Milan, Biccaca, Italy
  • NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
  • Follow-up from 2008 NCBO Clinical Phenotypes meeting

International Conference on Biomedical Ontology (ICBO) ↑

  • July 27-29, 2009, Buffalo, NY
  • Co-sponsored by the National Center for Ontological Research and the University at Buffalo
  • Proceedings

From Basic Formal Ontology to the Information Artifact Ontology ↑

  • July 25-26, 2009, Buffalo, NY
  • NCBO Tutorial co-located with the International Conference on Biomedical Ontology (ICBO); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
  • Webcast

International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy ↑

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
  • Co-organized with the Japanese Center for Ontological Research

Evolutionary Biology and Ontologies ↑

  • January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology (SICB)
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes ↑

How to Make Useful Ontologies for Biomedicine ↑

  • July 19, 2008, Toronto, Canada.
  • NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
  • Slides

Evolutionary Biology and Ontologies ↑

  • June 20, 2008, Minneapolis, MN
  • Held in conjunction with the Evolution 2008 meeting.
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

The Ontology of Relations ↑

  • May 19-20, 2008, Denver, CO
  • NCBO Dissemination Workshop

Introduction to Biomedical Ontologies ↑

  • April 12-13, 2008, Buffalo, NY
  • NCBO Tutorial (Faculty: Barry Smith)
  • Webcast

Ontologies of Cellular Networks ↑

  • March 27-28, 2008, Newark, NJ
  • NCBO Dissemination Workshop
  • Publication

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • February 26-27, 2008, Tokyo, Japan, organized in conjunction with InterOntologies 08
  • NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research

Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences ↑

  • July 23-27, 2007: Schloss Dagstuhl, Germany
  • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
  • Proceedings

Ontologies for Biomedicine – How to Make and Use Them ↑

  • July 21, 2007, Vienna, Austria
  • NCBO Tutorial at ISMB 2007 (Faculty: Nigam Shah and Barry Smith)

Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research ↑

Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More ↑

  • June 12-13th, 2007, University of Utah, Salt Lake City, UT

Clinical Trial Ontology ↑

  • May 16-17 2007, NIH Campus, Bethesda, MD
  • NCBO Dissemination Workshop
  • OCRe Ontology

Dagstuhl Seminar: Ontology Interoperability in Biomedicine ↑

  • March 27-30, 2007, Dagstuhl, Germany
  • NCBO Dissemination Workshop
  • Seminar Report

The OBO Foundry - A Gold Standard Approach to Ontology Evaluation ↑

Phenotype Ontology ↑ Announcement

  • December 1-2, 2006, Clark Center, Stanford, CA
  • NCBO Dissemination Workshop

Connecting BioPAX to Other Biomedical Ontologies

  • November 20-21, 2006, MIT, Boston, MA
  • NCBO Tutorial (Faculty: Barry Smith)

Panel on the Future of HL7 ↑

Genomics Knowledge Representation for Clinical Trials ↑

  • AMIA Annual Symposium, November 12, 2006, Washington DC
  • Tutorial (Faculty: Nigam Shah, Barry Smith, and others)

Biomedical Imaging Ontologies ↑

  • AMIA Annual Symposium, November 11, 2006, Washington DC,
  • Follow-Up Meeting to NCBO Dissemination Workshop on the Ontology of Images

Biomedical Ontology in Action ↑

  • November 8, 2006, Baltimore, MD
  • Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
  • Publication

Ontology of Diseases ↑

  • November 6-7, 2006, John Hopkins University, Baltimore
  • NCBO Dissemination Workshop organized in association with the FOIS 2006 (Formal Ontology and Information Systems) Conference

Ontology Development ↑

  • September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)

Anatomy Ontology Workshop ↑

Tutorial on Standards and Ontologies ↑

Ontologies for Biomedicine – How to Make and Use Them ↑

On the Need and Utility of Ontologies ↑"

  • Jul 30-August 4, 2006, Fortaleza, Brazil.
  • Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.

Functional Genomics Investigation Ontology (FuGO) 2nd Workshop ↑.

  • July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
  • This meeting led to creation of OBI Ontology for Biomedical Investigations;

Ontology Visualization with Jambalaya ↑

  • July 23-26, 2006, Stanford, CA
  • NCBO Tutorial (Faculty: Chris Callendar)

Scientific Ontologies: NCBC Special Interest Group Meeting ↑

  • July 17-19, 2006, NIH, Bethesda, MD
  • i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [1]

Ontology: A Vision for the Future and Its Realization ↑

Training Course in Biomedical Ontologies ↑

Phenotype Annotation Meeting ↑

  • May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
  • NCBO Dissemination Workshop

Principles of Biomedical Ontology Design ↑

The Ontology of Images ↑

  • March 24-25, 2006, Stanford, CA
  • NCBO Dissemination Workshop
  • Led to establishment of standards for BIRNLex Ontology
  • Webcast

Ontology Workshop: Focus on Immunology ↑

  • March 21-22, 2006, Gaitherburg, MD
  • Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
  • Publication; Ontology

Navigating the Translational Researcher Through a Complex of Animal and Biological Resources ↑

  • March 6-7, 2006, Bethesda, MD
  • Presentation by Monte Westerfield on Animal Models and Ontologies

BIRN ontology workshop Agenda

  • February 28-March 1, 2006, Stanford, CA
  • Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" Part 1 Part 2
  • NCBO Dissemination Workshop
  • Led to creation of BIRNLex ontology

Functional Genomics Investigation Ontology (FuGO): First Workshop ↑

International Biocurator Meeting ↑

  • December 8-11, 2005, Asilomar, CA
  • Attending: Sima Misra, Chris Mungall, Monte Westerfield

Phenotype Ontology Content Workshop ↑

  • Nov. 19-20, 2005, Cold Spring Harbor, NY
  • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield

Workshop on Bio-Ontologies ↑

  • October 28, 2005, Buffalo, NY
  • Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider

Making Ontologies Better ↑

  • NCBO Training Workshop (Faculty: David Hill and Barry Smith)
  • October 28, 2005, Buffalo, NY
  • Slides
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