Difference between revisions of "From OBO to OWL and back"
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Please use [http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/oboedit-2.1beta16/ OBO-Edit 2.1beta16]. | Please use [http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/oboedit-2.1beta16/ OBO-Edit 2.1beta16]. | ||
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| + | Note - for (recent versions of?) Windows, the Java Virtual Machine is limited to 1G. If OBO-Edit fails to load in windows with the default memory settings, please re-install with memory set to 1024M. | ||
=== OBO to OWL conversion tool === | === OBO to OWL conversion tool === | ||
Revision as of 11:44, 26 July 2011
This page is the location for downloads and instructions for the ICBO 2011 tutorial "From OBO to OWL and back again" to be held on July 27th.
Program
The program, including suggestions for preparatory reading, can be found here:
http://icbo.buffalo.edu/2011/TutorialF.pdf
Slides
Coming soon
Test ontology
Coming soon
Software to install
OBO-Edit 2.1
Please use OBO-Edit 2.1beta16.
Note - for (recent versions of?) Windows, the Java Virtual Machine is limited to 1G. If OBO-Edit fails to load in windows with the default memory settings, please re-install with memory set to 1024M.
OBO to OWL conversion tool
Download the latest version (0.3) of the Obo Ontology Release Tool GUI from here:
Installers are available for mac, windows and unix. After installation, you will have two applications:
- The obo2owl converter
- The Obo Ontology Release Tool
Protege 4.1
Please install Protege 4.1 release candidate 5 (build 235).
This version of Protege should not need any configuring.
Previous version required configuring to ensure labels (OBO names) are displayed in all components instead of IDs. Try loading an OBO file to test this (it should load straight in, even though the dialog box asks you to choose and OWL file). If you can only see IDs in the class hierarchy, then you should configure following the instructions here: