Difference between revisions of "Workshop Agenda"
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#* Expressing biological concepts in terms of an ontology <b>[Stanford]</b> | #* Expressing biological concepts in terms of an ontology <b>[Stanford]</b> | ||
#<b>Ontology Usage (1PM-5PM)</b> | #<b>Ontology Usage (1PM-5PM)</b> | ||
| − | # | + | #* Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO) <b>[Stanford]</b> |
| − | # | + | #* Possible future directions (formal relation ontologies and composed annotations) <b>[Stanford]</b> |
| − | # | + | #* Image annotation with ontologies <b>[Stanford]</b> |
===Mar 1=== | ===Mar 1=== | ||
#<b>Basics of Ontologies (9AM-Noon)</b> | #<b>Basics of Ontologies (9AM-Noon)</b> | ||
Revision as of 15:31, 1 February 2006
Feb 28
- Background and motivation (9AM-10AM)
- Brief overview of major biological problems BIRN seeks to address [BIRN]
- Tools (10AM-Noon)
- Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) [BIRN]
- Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) [Stanford]
- Expressing biological concepts in terms of an ontology [Stanford]
- Ontology Usage (1PM-5PM)
- Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO) [Stanford]
- Possible future directions (formal relation ontologies and composed annotations) [Stanford]
- Image annotation with ontologies [Stanford]
Mar 1
- Basics of Ontologies (9AM-Noon)
- How to Build an Ontology [Barry]
- Discuss current capabilities and challenges related to ontologies in BIRN [BIRN]
- Content (1PM-5PM)
- Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- BIRN Ontologies: An Overview [Barry]
- The Ontology of Spatial Relations [Barry]
- Best practices; lessons learned from other ontology development projects [Barry]
- Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- Potential Applications: what do we need to get there from here?
- Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
- Computer reasoning with neuroanatomical/spatial component of Neuroscience data