Difference between revisions of "PATO Meeting"

Revision as of 16:20, 11 August 2006

The National Center for Biomedical Ontology will host a two-day meeting focused on the Phenotype and Trait Ontology (PATO) December 1-2, 2006 at Stanford University in Palo Alto, CA.

Thursday, November 30, 2006
- 7pm: Informal gathering for dinner (Gordon Biersch?)

Friday, December 1, 2006
- 8:30 - 5:30pm Meeting
  - Introduction to PaTO
  - Phenote

We aren't reserving a block of rooms anywhere, but these local hotels are close by and have Stanford shuttle service.

Russ Altman: Challenges for Representing Phenotype in Pharmacogenomics

Abstract: The PharmGKB (http://www.pharmgkb.org/) is an online resource devoted to comprehensive cataloguing of genetic variations relevant to variation in drug response. We curate primary data (genotype, phenotype at molecular, cellular, clinical level) as well as knowledge (literature curation, pathways, human annotations of key genes). We provide search and visualization tools for this information, in order to catalyze research in pharmacogenomics. For both activities, we need to index the relevant phenotypes for the purposes of indexing, aggregation, search, and automatic summarization and data mining. We need a flexible method for annotating phenotypes that are described in the literature (by curators). We would prefer to adopt community-based standards that would allow PharmGKB to interoperate with other databases, both human and model organism.

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 The [http://ncbo.us National Center for Biomedical Ontology] will host a two-day meeting focused on the [http://obo.sourceforge.net/cgi-bin/detail.cgi?attribute_and_value Phenotype and Trait Ontology (PATO)] December 1-2, 2006 at Stanford University in Palo Alto, CA.
-[http://www.fruitfly.org/pato/pato-form.html Register here.][http://www.wow-gold-sell.com/ wow gold]
+[http://www.fruitfly.org/pato/pato-form.html Register here.]
 ==Draft agenda==