Difference between revisions of "Meetings and Events"

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(→‎Upcoming meetings: moving past events down to proper section and removed 2007 subheader)
(→‎Past meetings: inserting meetings from 2nd half of 2006 and cleaning up formatting)
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== Past meetings ==
 
== Past meetings ==
  
−
**'''Phenotype Ontology (Workshop'''
+
*'''Phenotype Ontology (Workshop)'''
 
**December 1-2, 2006, Clark Center, Stanford, CA
 
**December 1-2, 2006, Clark Center, Stanford, CA
 
**[[PATO_Meeting| PATO meeting agenda]]
 
**[[PATO_Meeting| PATO meeting agenda]]
 
**Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
 
**Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
  
−
'''Functional Genomics investigation Ontology (FuGO) 2nd Workshop'''
+
*'''Panel on the Future of HL7'''
−
**July 24-28, 2006, Hinxton, UK
+
**AMIA Anual Symposium
−
**http://fugo.sourceforge.net/news/index.php
+
**November 14, 3.30-5.00pm., Washington DC
 +
**http://ontology.buffalo.edu/HL7/panel.htm
 
**Attending: Barry Smith
 
**Attending: Barry Smith
 +
 +
*'''Tutorial on Genomics Knowledge Representation for Clinical Trials'''
 +
**AMIA Annual Symposium
 +
**November 12, 2006, Washington DC
 +
**http://ontology.buffalo.edu/06/AMIAWorkshop.htm
 +
 +
*'''Biomedical Ontology in Action'''
 +
**KR-MED 2006
 +
**November 8, 2006, Baltimore
 +
**http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html
 +
**Attending: Werner Ceusters, Barry Smith
 +
 +
*'''Workshop on Ontology of Diseases'''
 +
**In association with FOIS 2006 (Formal Ontology and Information Systems)
 +
**November 6-7, 2006, John Hopkins University, Baltimore
 +
**[[Workshop on Ontology of Diseases | information on the Disease Ontology Workshop]]
 +
**Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith,  Monte Westerfield
 +
 +
*'''Fall NCBO Project Meeting'''
 +
**Oct. 23-25, 2006, Stanford
 +
** All Hands meeting
 +
** Advisory Comm. & NIH Program & Science officers invited
 +
 +
*'''Workshop on Philosophy of Biology'''
 +
**October 14-15, 2006, Buffalo, NY
 +
**http://ontology.buffalo.edu/06/pob
 +
**Attending: Werner Ceusters, Barry Smith
 +
 +
*'''American Society of Human Genetics'''
 +
**October 9-13, 2006, New Orleans, LA
 +
**[http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml]
 +
**Presentation to find collaborators, also ontology workshop
 +
 +
*'''Genomics Standards Consortium Workshop
 +
**National Institute for Environmental e-Science (NIEeS)
 +
**September 11-13, 2006, Hinxton, UK.
 +
** [http://www.niees.ac.uk/events/egenomics2006/index.shtml http://www.niees.ac.uk/events/egenomics2006/index.shtml]
 +
**Attending: Suzanna Lewis, Michael Ashburner, George Gkoutos
 +
 +
*'''Anatomy Ontology Workshop'''
 +
**September 8-9, 2006, Seattle
 +
**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
 +
**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield   
 +
 +
*'''Tutorial on Standards and Ontologies
 +
**Medical Informatics Europe
 +
**August 27, 2006, Maastricht, Netherlands.
 +
**http://ontology.buffalo.edu/06/MIE_Tutorial.htm
 +
**Attending: Werner Ceusters, Barry Smith
 +
 +
*'''IEEE Computational Systems Bioinformatics, 2006'''
 +
**August 14-18, 2006.  Stanford University
 +
**[http://www.lifesciencessociety.org/CSB2006/index.html http://www.lifesciencessociety.org/CSB2006/index.html]
 +
** Attending: Mark Musen (Keynote), rest of Stanford group (tutorial in bioontologies/semantic web)
 +
 +
*'''ISMB, 2006'''
 +
**August 6-10, 2006, Fortaleza, Brazil.
 +
** [http://ismb2006.cbi.cnptia.embrapa.br/ http://ismb2006.cbi.cnptia.embrapa.br/]
 +
** Attending: Michael Ashburner, Suzanna Lewis (Keynote speaker for Bio-ontologies SIG)
 +
 +
*'''In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot'''
 +
**Jul 30- August 4, 2006, Fortaleza, Brazil.
 +
** [http://www.swissprot20.org/ http://www.swissprot20.org/]
 +
** Attending: Michael Ashburner, Suzanna Lewis
  
 
*'''Functional Genomics investigation Ontology (FuGO) 2nd Workshop'''
 
*'''Functional Genomics investigation Ontology (FuGO) 2nd Workshop'''

Revision as of 10:33, 3 January 2007

Upcoming meetings

  • Reasoning with Biomedical Ontologies
    • June 20-23, 2007: Schloss Dagstuhl, Germany
    • Attending: Deborah McGuinness, Fabian Neuhaus, Nigam Shah, Barry Smith.
  • Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences
    • July 23-27, 2007: Schloss Dagstuhl, Germany
    • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
    • Attending: Michael Ashburner
    • http://www.dagstuhl.de/07301
  • All NCBCs Ontology workshop
    • Fall 2007, with Andreas Califano, Columbia, NY
  • Phenotype Ontology (Upper Level) workshop
    • 2007?

Past meetings

  • Phenotype Ontology (Workshop)
    • December 1-2, 2006, Clark Center, Stanford, CA
    • PATO meeting agenda
    • Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield
  • Workshop on Ontology of Diseases
    • In association with FOIS 2006 (Formal Ontology and Information Systems)
    • November 6-7, 2006, John Hopkins University, Baltimore
    • information on the Disease Ontology Workshop
    • Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, Monte Westerfield
  • Fall NCBO Project Meeting
    • Oct. 23-25, 2006, Stanford
    • All Hands meeting
    • Advisory Comm. & NIH Program & Science officers invited
  • Anatomy Ontology Workshop
    • September 8-9, 2006, Seattle
    • information on the Anatomy Ontology Workshop
    • Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield
  • In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot
  • 9th International Protege Conference
    • July 23-26, 2006, Stanford, CA
    • http://protege.stanford.edu/conference/2006/
    • Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar
  • NCBC All Hands Meeting
  • Core 1 & 2 Project Meeting
    • June 27-28, 2006, Berkeley, CA
    • Attending: Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute, Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
    • Working plan for core 1 & 2 goals
  • Core 1 & 2 Meeting
    • June 9, 2006, Berkeley, CA
    • Attending: Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)
  • NSF/RCN workshop on ontology and phylogeny
    • May 21-24, St. Louis, MO
    • Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
  • Phenotype Annotation Meeting
    • May 17-20, Hinxton, UK
    • Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
    • PATO meeting agenda
  • Fish Evolutionary Biology Working Group Meeting
    • April 9-11, National Evolutionary Synthesis Center (NESCent), Durham, NC
    • Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield
  • Gene Ontology Workshop
    • March 31-April 3, 2006, St. Croix
    • Attending: Michael Ashburner, Suzanna Lewis, Chris Mungall, Barry Smith
  • Workshop on Ontology of Images
    • March 24-25, 2006, Stanford, CA
    • CCB NCBC and others with biomedical image ontologies
    • [Workshop on Ontology of Images | info on Ontology of Images workshop]
    • Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
  • Immunology Ontology Workshop: NIAID
    • March 21-22, 2006, Gaitherburg, MD
    • Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
  • Semantic Technology Conference
    • March 6-9, 2006, San Jose, CA
    • http://www.semantic-conference.com/
    • Attending: Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)
  • NIH NCRR Animal Models workshop
    • March 6-7, 2006, Bethesda, MD
    • Attending: Monte Westerfield
  • BIRN ontology workshop
    • February 28-March 1, 2006, Stanford, CA
    • Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
  • NLM vocabulary collection and distribution meeting
    • February 27-28, 2006, NLM, Washington, DC
    • Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig
  • NIAID meeting
    • February, 2006, Washington, DC
    • Attending: Mark Musen
  • cBio Phenotype Annotation tool specification
    • February 21-23, 2006, Berkeley, CA
    • Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)
  • Mini-Syposium on Semantic Enrichment of Scientific Literature
    • February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
    • Attending: Michael Ashburner (speaker)
  • cBio OBD specification
    • February 17, 2006, Berkeley, CA
    • Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
  • PharmGKB and cBiO meeting
    • January 31, 2006, Stanford, CA
    • Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)
  • Pacific Symposium on Biocomputing, 2006
  • NCBC Meeting
    • Dec. 15-16, NIH, Bethesda, MD
    • Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
    • Introducting new NCBCs to each other and NIH staff
  • Phenotype Annotation Meeting
    • December 11-12, 2005, Asilomar conference center
    • Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
    • Define requirements of phenotype annotation tools
  • National Bioinformatics Network, South Africa
    • December 2, 2005, University of Cape Town, SA
    • Michael Ashburner (Keynote)
  • Phenotype Ontology Content Workshop
    • Nov. 19-20, 2005, Cold Spring Harbor, NY
    • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
    • Media:PhenoAgenda.doc
  • Stanford/Mayo/Berkeley Meetings
    • Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
    • Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam, (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
  • Forbes Dewey Meeting
    • Late October, MIT, Cambridge, MA
    • Michael Ashburner, chair
    • Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
  • Genome Informatics Meeting
    • Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
    • Suzanna Lewis (organizer, speaker)
  • 1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology
    • October, 2005, Caxambu, Brazil
    • Michael Ashburner (Keynote)
  • Applied Biosystems Inc., Science Meeting
    • September, 2005, Asilomar, CA
    • Michael Ashburner (Keynote)
  • MGED8, Bergen
    • September, 2005
    • Michael Ashburner (Keynote)
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