Difference between revisions of "Networks"
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*4. to promote further ontology development in this area with the goal of accelerating our ability to understand basic biological phenomena and to leverage experimental data | *4. to promote further ontology development in this area with the goal of accelerating our ability to understand basic biological phenomena and to leverage experimental data | ||
| − | == Agenda | + | == Preliminary Agenda == |
'''Thursday, March 27, 2008''' | '''Thursday, March 27, 2008''' | ||
| − | * 9 | + | * 9:00am Registration and Continental Breakfast |
| − | * 10 | + | * 10:00am Session 1 - Introductions |
| − | * | + | ''Moderator:'' |
| − | :: | + | * 10:00am Participant Self-Introductions |
| + | * 10:15am Introduction to Ontology | ||
| + | * 10:45am The OBO Foundry | ||
| + | * 11:15am Refreshment Break | ||
| + | * 11:45am | ||
| − | * | + | * 12:45pm Lunch Break |
| − | |||
| − | |||
| − | |||
| − | |||
| − | * | + | * 2:00pm Session 2 - Cellular Networks and Cellular Network Data |
| + | ''Moderator:'' | ||
| + | |||
| + | * 3:15pm Refreshment Break | ||
| + | |||
| + | * 5:00pm End of Day 1 | ||
| − | |||
| − | |||
| − | |||
'''Friday, March 28, 2008''' | '''Friday, March 28, 2008''' | ||
| − | *8 | + | * 8:30am Continental Breakfast |
| + | |||
| + | * 9:00am Session 3 - Ontologies of Cellular Networks: Alternative Approaches | ||
| + | ''Moderator:'' | ||
| − | * | + | * 10:45am Refreshment Break |
| − | |||
| − | |||
| − | * Session | + | * Session 4 - |
| − | + | ''Moderator:'' | |
| − | |||
| − | * | + | * 12:45pm Lunch Break |
| − | : | + | * 2:00 Session 5 - Ontologies of Cellular Networks: The Next Steps |
| − | + | ''Moderator: Suzanna Lewis (NCBO, Berkeley)'' | |
| − | * | + | * 4:00pm End of Day 2 |
==Participants== | ==Participants== | ||
Revision as of 11:36, 15 January 2008
Workshop on Ontologies of Cellular Networks
Goals
The National Center for Biomedical Ontology will host a two-day workshop focused on ontologies of cellular networks.
The goals of this workshop are:
- 1. to provide an introduction to the basic tools and methods of ontology
- 2. to foster networking of, and enhanced coordination between, those groups already working on ontologies of cellular networks
- 3. to identify problems which must be solved if ontology methods are to be extended to represent biological mechanisms in greater detail
- 4. to promote further ontology development in this area with the goal of accelerating our ability to understand basic biological phenomena and to leverage experimental data
Preliminary Agenda
Thursday, March 27, 2008
- 9:00am Registration and Continental Breakfast
- 10:00am Session 1 - Introductions
Moderator:
- 10:00am Participant Self-Introductions
- 10:15am Introduction to Ontology
- 10:45am The OBO Foundry
- 11:15am Refreshment Break
- 11:45am
- 12:45pm Lunch Break
- 2:00pm Session 2 - Cellular Networks and Cellular Network Data
Moderator:
- 3:15pm Refreshment Break
- 5:00pm End of Day 1
Friday, March 28, 2008
- 8:30am Continental Breakfast
- 9:00am Session 3 - Ontologies of Cellular Networks: Alternative Approaches
Moderator:
- 10:45am Refreshment Break
- Session 4 -
Moderator:
- 12:45pm Lunch Break
- 2:00 Session 5 - Ontologies of Cellular Networks: The Next Steps
Moderator: Suzanna Lewis (NCBO, Berkeley)
- 4:00pm End of Day 2
Participants
Participants will include:
Robert Arp (NCBO / Buffalo)
Gary Bader (BioPAX / University of Toronto)
Helen Berman (PDB / Ruttgers)
William Bug (BIRN Ontology Task Force, UC San Diego)
Werner Ceusters (Ontology Research Group, University at Buffalo)
Lindsay Cowell (Infectious Disease Ontology / Duke University)
Emek Demir (BioPAX / Memorial Sloan-Kettering Cancer Center)
Peter D'Eustachio (Reactome / New York University)
Ken Fukuda (INOH / Tokyo)
Gopal Gopinathrao (Reactome / Cold Spring Harbor Laboratories)
Nancy Gough (Science)
Suzanna Lewis (NCBO, Berkeley)
Joanne Luciana (BioPAX / Harvard Medical School)
Peter Lyster (NIH / NIGMS)
Avi Ma'ayan (Mount Sinai, NY)
J. L. E. Mejino, Jr. (FMA Ontology, University of Washington, Seattle)
Darren Natale (Protein Ontology/PIR, Georgetown University)
Oliver Ruebenacker (Center for Cell Analysis and Modelling / University of Connecticut Health Center)
Alan Ruttenberg (BioPAX / Science Commons)
Andrey Rzhetsky (Chicago)
Chris Sander (BioPAX / Memorial Sloan-Kettering Cancer Center)
Richard Scheuermann (UTexas SW Medical Center)
Stuart Sealfon (Mount Sinai, NY)
Barry Smith (NCBO / Buffalo)
Andrea Splendiani (Medical Informatics, Rennes, France)
Cathy Wu (Protein Ontology/PIR, Georgetown University)
Venue
Hilton Hotel Newark Airport A block of rooms has been set aside for early registrants.
Links
Literature
Current progress in network research
An Evaluation of Ontology Exchange Languages for Bioinformatics