CL:Checklist

Name Changes

cell by organism

cell by organism CL:0000004 becomes cell by phylum

• Alex: Y

macrophage (sensu Diptera)

macrophage (sensu Diptera) CL:0000401 becomes dipeteran macrophage

• Alex: Y

macrophage (CL:0000235) becomes vertebrate macrophage Y

phagocyte (sensu Vertebrata)

phagocyte (sensu Vertebrata) CL:0000518 becomes vertebrate macrophage

• Alex: Y

phagocyte (sensu Nematoda and Protostomia) becomes invertebrate phagocyte Y cardiac muscle cell (sensu Arthopoda) becomes cardioblast-derived cardiac muscle cell Y epidermal cell (sensu Insecta)– becomess epidemioblast-derived epidermal cell Y

podocyte (sensu Diptera)

podocyte (sensu Diptera) CL:0000391 becomes Dipteran podocyte

• Alex: Y

podocyte

podocyte CL:0000653 becomes vertebrate podocyte

• Alex: Y

glioblast (sensu Nematoda and Protostomia)

glioblast (sensu Nematoda and Protostomia) CL:? becomes invertebrate glioblast

• Alex: Y

glioblast (sensu Vertebrata)

glioblast (sensu Vertebrata) CL:0000339 becomes vertbrate glioblast

• Alex: Y

glial cell (sensu Nematoda and Protostomia) )

glial cell (sensu Nematoda and Protostomia) ) CL:? becomes invertebrate glial cell

• Alex: Y

glial cell (sensu Vertebrata) )

glial cell (sensu Vertebrata) ) CL:? becomes invertebrate glial cell

• Alex: Y

neuron associated cell (sensu Nematoda and Protostomia) )

neuron associated cell (sensu Nematoda and Protostomia) ) CL:? becomes invertebrate NAS

• Alex: Y

neuron associated cell (sensu Vertebrata) )

neuron associated cell (sensu Vertebrata) ) CL:? becomes vertebrate NAS

• Alex: Y

extraembryonic cell/ germ line stem cell )

extraembryonic cell/ germ line stem cell ) CL:? replaced with EEC/primordial germ cell

• Alex: Y

Obsoletions/Merges

cardioblast (sensu Arthropoda)

cardioblast (sensu Arthropoda) CL:0000465

• Alex: Y

blood cell (sensu Nematoda and Protostomia)

blood cell (sensu Nematoda and Protostomia) CL:0000390

• Alex: Y

hemocyte (sensu Nematoda and Protostomia)

hemocyte (sensu Nematoda and Protostomia) CL:0000387

• Alex: Y

prohemocyte (sensu Nematoda and Protostomia)

prohemocyte (sensu Nematoda and Protostomia) CL:0000385

• Alex: Y

chemotactic amoeboid cell (sensu Mycetozoa)

chemotactic amoeboid cell (sensu Mycetozoa) CL:0000289

• Alex: Y

prohemocyte (sensu Nematoda and Protostomia)

prohemocyte (sensu Nematoda and Protostomia) CL:0000385

• Alex: Y

chemotactic amoeboid cell (sensu Mycetozoa)

chemotactic amoeboid cell (sensu Mycetozoa) CL:0000289

• Alex: Y

Distal tip cell (sensu nematoda) –

Distal tip cell (sensu nematoda) – CL:0000422

• Alex: Y

pigment cell (sensu Nematoda and Protostomia)

pigment cell (sensu Nematoda and Protostomia) CL:0000341

• Alex: Y maybe, but it would be great to get a definition for pigment cell

pigment cell (sensu Vertebrata)

pigment cell (sensu Vertebrata) CL:0000342

• Alex: Y

visual pigment cell (sensu Nematoda & Protostomia)

visual pigment cell (sensu Nematoda & Protostomia) CL:0001658

• Alex: Mycetozoa Y

visual pigment cell (sensu Vertebrata)

visual pigment cell (sensu Vertebrata) CL:0000343

• Alex: Y

non-visual cell (sensu Vertebrata)

non-visual cell (sensu Vertebrata) CL:0000344

• Alex: Y

receptor cell (sensu Animalia)

receptor cell (sensu Animalia) CL:0000006

• Alex: Y

sperm cell (sensu Viridiplantae)

sperm cell (sensu Viridiplantae) CL:0000366

• Alex: Y

spore (sensu Mycetozoa)

spore (sensu Mycetozoa) CL:000029

• Alex: N, see my email discussion

vegetative cell

vegetative cell CL:0000296

• Alex: N, no true commonalities here

vegetative cell (sensu Fungi)

vegetative cell (sensu Fungi) CL:0000334

• Alex: N, no true commonalities here

vegetative cell (sensu Mycetozoa)

vegetative cell (sensu Mycetozoa) CL:0000263

• Alex: N, no true commonalities here

CNS neuron (sensu Nematoda and Protostomia)

CNS neuron (sensu Nematoda and Protostomia) CL:0000028

• Alex: Y

CNS neuron (sensu Vertebrata)

CNS neuron (sensu Vertebrata) CL:0000117

• Alex: Y

neuroblast (sensu Nematoda and Protostomia) Y

neuroblast (sensu Vertebrata)

neuroblast (sensu Vertebrata) CL:0000337

• Alex: Y

neuroglioblast (sensu Nematoda)

neuroglioblast (sensu Nematoda) CL:0000662

• Alex: Y

support cell (sensu Nematoda and Protostomia)

support cell (sensu Nematoda and Protostomia) CL:0000378

• Alex: Y

support cell (sensu Nematoda)

support cell (sensu Nematoda) CL:0000619

• Alex: Y

female germ line stem cell (sensu Nematoda and Protostomia)

female germ line stem cell (sensu Nematoda and Protostomia) CL:0000088

• Alex: Y

female germ line stem cell (sensu Vertebrata)

female germ line stem cell (sensu Vertebrata) CL:0000090

• Alex: Y

germ line stem cell (sensu Nematoda and Protostomia)

germ line stem cell (sensu Nematoda and Protostomia) CL:0000086

• Alex: Y

germ line stem cell (sensu Vertebrata)

germ line stem cell (sensu Vertebrata) CL:0000085

• Alex: Y

male germ line stem cell (sensu Nematoda and Protostomia)

male germ line stem cell (sensu Nematoda and Protostomia) CL:0000087

• Alex: Y

male germ line stem cell (sensu Vertebrata)

male germ line stem cell (sensu Vertebrata) CL:0000089

• Alex: Y

male germ line stem cell

male germ line stem cell CL:0000016

• Alex: Y

Cone bipolar cells types 1-9 (sensu mouse) )

Cone bipolar cells types 1-9 (sensu mouse) ) CL:?

• Alex: Y

cone cell (sensu Endopterygota)

cone cell (sensu Endopterygota) CL:0000718

• Alex: Y

anterior cone cell (sensu Endopterygota)

anterior cone cell (sensu Endopterygota) CL:0000720

• Alex: Y

posterior cone cell (sensu Endopterygota)

posterior cone cell (sensu Endopterygota) CL:0000719

• Alex: Y

equatorial cone cell (sensu Endopterygota)

equatorial cone cell (sensu Endopterygota) CL:0000721

• Alex: Y

Disjointness violations

Prok/Euk

Adding a disjoint_from axiom between prokaryotic cell and eukaryotic cell. Remove is_a parentage of all violators (eg spore)

• Chris: Y