Difference between revisions of "Tutorials and Classes"
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'''July 20: Morning''' | '''July 20: Morning''' | ||
| − | *Fabian Neuhaus (NIST): [http://www.bioontology.org/wiki/index.php/Neuhaus Formal Methods for Biologists]; also offered as part of 2-day class on [http://www.bioontology.org/wiki/index.php/Bittner_and_Donnelly Spatial Ontology and Qualitative Reasoning] Slides: [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus] | + | *Fabian Neuhaus (NIST): [http://www.bioontology.org/wiki/index.php/Neuhaus Formal Methods for Biologists]; also offered as part of 2-day class on [http://www.bioontology.org/wiki/index.php/Bittner_and_Donnelly Spatial Ontology and Qualitative Reasoning] |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus] | ||
'''July 20: Afternoon''' | '''July 20: Afternoon''' | ||
| − | *Mathias Brochhausen (IFOMIS): [[The Ontology of Paleobiology]] Slides: [http://icbo.buffalo.edu/presentations/Brochhausen.ppt Brochhausen] | + | *Mathias Brochhausen (IFOMIS): [[The Ontology of Paleobiology]] |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Brochhausen.ppt Brochhausen] | ||
'''July 21: Morning''' | '''July 21: Morning''' | ||
| − | * Colin Batchelor (Royal Society of Chemistry): [[An Introduction to Chemistry Ontology]] Slides: [http://icbo.buffalo.edu/presentations/Batchelor.ppt Batchelor] | + | * Colin Batchelor (Royal Society of Chemistry): [[An Introduction to Chemistry Ontology]] |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Batchelor.ppt Batchelor] | ||
'''July 21: Afternoon''' | '''July 21: Afternoon''' | ||
| Line 33: | Line 36: | ||
'''July 22: Morning''' | '''July 22: Morning''' | ||
| − | *Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] Slides: [http://icbo.buffalo.edu/presentations/Smith.ppt Smith] | + | *Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Smith.ppt Smith] | ||
'''July 22: Afternoon''' | '''July 22: Afternoon''' | ||
| − | *Olivier Bodenreider (National Library of Medicine): [[An Introduction to Biomedical Ontology]] Slides: [http://mor.nlm.nih.gov/pubs/pres/090722-ICBO-tutorial.pdf Bodenreider] | + | *Olivier Bodenreider (National Library of Medicine): [[An Introduction to Biomedical Ontology]] |
| − | *Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] Slides: [http://icbo.buffalo.edu/presentations//Ceusters.ppt Ceusters] | + | *Slides: [http://mor.nlm.nih.gov/pubs/pres/090722-ICBO-tutorial.pdf Bodenreider] |
| + | *Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]] | ||
| + | *Slides: [http://icbo.buffalo.edu/presentations//Ceusters.ppt Ceusters] | ||
'''July 23: Morning''' | '''July 23: Morning''' | ||
| − | *Natasha Noy (Stanford University) [[Using_WebProtege_and_NCBO_BioPortal | Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies]] Slides: [http://icbo.buffalo.edu/presentations/Noy.pdf Noy] | + | *Natasha Noy (Stanford University) [[Using_WebProtege_and_NCBO_BioPortal | Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies]] |
| + | *Slides: [http://icbo.buffalo.edu/presentations/Noy.pdf Noy] | ||
'''July 23: Afternoon''' | '''July 23: Afternoon''' | ||
| − | *David Osumi-Sutherland (Flybase / Gene Ontology Consortium): [[OBO-Edit | The OBO-Edit Ontology Developer's Environment: A Practical Introduction]] Slides: [http://www.bioontology.org/wiki/index.php/OBO-Edit Osumi-Sutherland] | + | *David Osumi-Sutherland (Flybase / Gene Ontology Consortium): [[OBO-Edit | The OBO-Edit Ontology Developer's Environment: A Practical Introduction]] |
| + | *Slides: [http://www.bioontology.org/wiki/index.php/OBO-Edit Osumi-Sutherland] | ||
---- | ---- | ||
Revision as of 06:28, 8 August 2009
Logistics and Registration
Logistics details, including room locations, are available here.
A registration form is available here. Please note that pre-registration for tutorials and classes is compulsory.
Tutorials and classes are co-located with the International Conference on Biomedical Ontology.
Half-Day Tutorials
Morning sessions are from 9am to 12.30pm. Afternoon sessions are from 1.30pm to 5pm.
July 20: Morning
- Fabian Neuhaus (NIST): Formal Methods for Biologists; also offered as part of 2-day class on Spatial Ontology and Qualitative Reasoning
- Slides: Neuhaus
July 20: Afternoon
- Mathias Brochhausen (IFOMIS): The Ontology of Paleobiology
- Slides: Brochhausen
July 21: Morning
- Colin Batchelor (Royal Society of Chemistry): An Introduction to Chemistry Ontology
- Slides: Batchelor
July 21: Afternoon
- Possible excursion to Niagara Falls: 25 minutes from conference venue
July 22: Morning
- Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology
- Slides: Smith
July 22: Afternoon
- Olivier Bodenreider (National Library of Medicine): An Introduction to Biomedical Ontology
- Slides: Bodenreider
- Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology
- Slides: Ceusters
July 23: Morning
- Natasha Noy (Stanford University) Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies
- Slides: Noy
July 23: Afternoon
- David Osumi-Sutherland (Flybase / Gene Ontology Consortium): The OBO-Edit Ontology Developer's Environment: A Practical Introduction
- Slides: Osumi-Sutherland
Two-Day Classes
Classes meet from 9am to 5pm, with lunch from 12.30 to 1.30pm.
July 20-21
Randall Dipert and Neil Williams (Buffalo): The Ontology of Events, Powers and Dispositions
- Slides: Dipert
Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): Spatial Ontology and Qualitative Reasoning
July 22-23
Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): From Basic Formal Ontology to the Information Artifact Ontology
- Slides: Smith Ceusters Ruttenberg
- Video material available for download: [1]
David Hershenov (Buffalo): Metaphysical Foundations of Biomedical Ethics