Difference between revisions of "BFO 2011"
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::Atoms, molecules | ::Atoms, molecules | ||
::Bodies of energy; fields; portions of matter | ::Bodies of energy; fields; portions of matter | ||
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:Sites | :Sites | ||
| + | ::The Environment Ontology | ||
| + | ::Geographical entities | ||
:Object boundaries | :Object boundaries | ||
| + | ::Spatial region boundaries | ||
::Granularity | ::Granularity | ||
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:Course / life / history / projection | :Course / life / history / projection | ||
| − | '''4:00pm Special session on | + | '''4:00pm Special session on Mental and Neurological Ontologies (NDO)(Moderator: Alex Diehl)''' |
| − | |||
| − | Janna Hastings: "From brain science to mind science with the Mental Functioning Ontology" | + | Janna Hastings: "From brain science to mind science with the Mental Functioning Ontology (MFO)" |
| − | Werner Ceusters: "The Mental Disease Ontology" | + | Werner Ceusters: "The Mental Disease Ontology (MDO)" |
| − | Alex Diehl: "The Neurological Disease Ontology" | + | Alex Diehl: "The Neurological Disease Ontology (NDO)" |
Friday November 11 | Friday November 11 | ||
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'''10:00am Coffee''' | '''10:00am Coffee''' | ||
| − | 1pm | + | '''1pm Regions (Moderator WC)''' |
| − | + | :Spatial region | |
| − | Incorporation of RCC8 and Allen Calculus? | + | :Spatio-temporal and temporal region |
| + | :Region and frame of reference | ||
| + | ::Incorporation of RCC8 and Allen Calculus? | ||
| + | |||
| + | '''Final Session''' | ||
| + | BFO-Reference | ||
Revision as of 06:53, 29 October 2011
Basic Formal Ontology Editorial Meeting
Venue: Room B1-360, Ground Floor, Center of Excellence in Bioinformatics and Life Sciences
Date: November 10-11, 2011
Goal of This Meeting
To define a strategy for the future maintenance of Basic Formal Ontology. To create a BFO Reference, designed as an authoritative documentation of the BFO ontology, including an updated version of the BFO 1.0 taxonomy together with the top level relations of the Relation Ontology. To define a strategy to create BFO OWL, including a treatment of temporal relations, based on BFO Reference.
Tentative Agenda
Thursday November 10
9:00am Strategy for Future Development of BFO (Moderator: WC)
- The BFO Reference
- BFO-conformant extensions
- Governance process
- Universals and particulars
- Rules for defined classes and abbreviations
- Relations
- inside BFO
- outside BFO
- Formalization
- OWL, OBO, FOL
- Definitions
- Axioms
- Versioning policies
10:00am Coffee
10:15am Material entity (Moderator: BS)
- Object; fiat object part; object aggregate
- Conjoined twins
- Atoms, molecules
- Bodies of energy; fields; portions of matter
- Sites
- The Environment Ontology
- Geographical entities
- Object boundaries
- Spatial region boundaries
- Granularity
12:00pm Lunch
1pm BFO Dependent Continuant (Moderator: BS)
- Dependence, inherence
- Quality;
- Reciprocal quality pair
- Relational quality
- State
- Comparison of qualities
- Wavelength, frequency
- Realizable dependent continuant
- Disposition and its subcategories
- Reciprocal disposition pair
- Relational disposition
- Physical basis
- Generically dependent continuant (GDC)
- GDC as bearer of quality
2.30pm Break
2.45pm BFO Occurrent (Moderator BS)
- Predicates applied to processes
- Rates
- Flows
- Course / life / history / projection
4:00pm Special session on Mental and Neurological Ontologies (NDO)(Moderator: Alex Diehl)
Janna Hastings: "From brain science to mind science with the Mental Functioning Ontology (MFO)" Werner Ceusters: "The Mental Disease Ontology (MDO)" Alex Diehl: "The Neurological Disease Ontology (NDO)"
Friday November 11
9am BFO OWL (Moderator AR)
- Relations, including short-cut relations
- Axioms relating to relations
10:00am Coffee
1pm Regions (Moderator WC)
- Spatial region
- Spatio-temporal and temporal region
- Region and frame of reference
- Incorporation of RCC8 and Allen Calculus?
Final Session
BFO-Reference
Participants
- Thomas Bittner
- Mathias Brochhausen
- Werner Ceusters
"Randall Dipert
- Alexander Diehl
- Janna Hastings
- Mark Jensen
- Fabian Neuhaus
- Mark Ressler
- Alan Ruttenberg
- Stefan Schulz
- Barry Smith
- Neil Williams
Remotely:
- Larry Hunter
- Chris Mungall