CTS2 RDF Plugin

CTS2 REST Services

CodeSystemCatalogQuery

• Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems
• Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=nci&filtercomponent=resourceName
• Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=databases&filtercomponent=resourceSynopsis
• Get CodeSystems With Specified Limit: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?maxtoreturn=5
• Get CodeSystems With Specified Limit and Page: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?maxtoreturn=5&page=10

CodeSystemCatalogRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/TGMA
• Read by uri: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystembyuri?uri=http://bioportal.bioontology.org/ontologies/1030
• Find CodeSystemByURI: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystembyuri?uri=http://bioportal.bioontology.org/ontologies/1030
• Find CodeSystemByURI with redirect: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystembyuri?uri=http://bioportal.bioontology.org/ontologies/1030&redirect=true

CodeSystemCatalogVersionQuery

• Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions
• Query code system versions of code system: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/SNOMEDCT/versions
• Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=nci&filtercomponent=resourceName
• Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=anatomy&filtercomponent=resourceSynopsis
• CodeSystemCatalogQuery by Description (default) http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=bioinformatics
• CodeSystemCatalogQuery by Name http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?filtercomponent=resourceName&matchvalue=bioa
• CodeSystemCatalogQuery Version of CodeSystem by CodeSystem URI http://informatics.mayo.edu/cts2/services/bioportal-rdf//codesystembyuri/versions?uri=http://bioportal.bioontology.org/ontologies/1030
• CodeSystemCatalogQuery Version of CodeSystem by CodeSystem URI (with redirect) http://informatics.mayo.edu/cts2/services/bioportal-rdf//codesystembyuri/versions?uri=http://bioportal.bioontology.org/ontologies/1030&redirect=true

CodeSystemVersionCatalogRead

• CodeSystemCatalogRead by Name ** http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/CARO/version/CARO-46255
• CodeSystemCatalogRead by Official Version Id ** http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/CL/version/2011-06-03

EntityDescriptionQuery

• Query with 'description' http://informatics.mayo.edu/cts2/services/bioportal-rdf/entities?matchvalue=swelling
• Get all entities of code system version: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/AIR/version/AIR_1993_RRF/entities
• Query entities of code system version with 'keyword' filter: http://informatics.mayo.edu/cts2/rest/codesystem/LNC/version/LNC_226_RRF/entities?matchvalue=100
  • ('contains' and 'exactmatch' algorithms supported)
• 'Count' via HEAD call

EntityDescriptionRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/LNC/version/LNC_226_RRF/entity/LP31957-1
• Or using CSV OfficialResourceVersionId : http://informatics.mayo.edu/cts2/rest/codesystem/LNC/version/226/entity/LP31957-1

  NOTE: Does not support Entity lookup by URI (See notes below)

• 'Exists' via HEAD call

ValueSetCatalogQuery

• Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets
• ValueSetCatalogQuery by Description (default) http://informatics.mayo.edu/cts2/services/bioportal-rdf//valuesets?matchvalue=subtree
• Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?matchvalue=set&filtercomponent=resourceName
• Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?matchvalue=anatomy&filtercomponent=resourceSynopsis
• Query based on code system restriction: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?codesystem=SNOMEDCT

ValueSetCatalogRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SNOMEDCT-MAS
• 'Exists' via HEAD call

ValueSetDefinitionQuery

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definitions
• 'Exists' via HEAD call

ValueSetDefinitionRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definition/42157
• 'Exists' via HEAD call

ValueSetDefinitionResolutionService

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definition/42157/resolution?resolutiontype=entitydirectory
• 'Exists' via HEAD call

AssociationQuery

• Query 'sourceOf' associations of entity: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/entity/100001001/sourceof
• Query 'children' associations of entity: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/MSH/version/MSH_2009_2009_02_13_RRF/entity/D006321/children

AdvancedAssociationQuery

• Get root nodes of a code system version: http://informatics.mayo.edu/cts2/rest/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/graph?focus=TOP_NODE&direction=FORWARD
• Get graph of focusn node in code system version:http://informatics.mayo.edu/cts2/rest/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/graph?focus=243796009&direction=FORWARD
• NOTES: Currently only supports direction=FORWARD and depth=1

SVN

SVN url