Difference between revisions of "Ontology Change Requests"
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All of the change types that BioPortal supports are taken from the [https://incatools.github.io/kgcl/ Knowledge Graph Change Language], a formal model for describing ontology change operations. | All of the change types that BioPortal supports are taken from the [https://incatools.github.io/kgcl/ Knowledge Graph Change Language], a formal model for describing ontology change operations. | ||
− | == How to enable change requests == | + | == How to enable change requests for your ontology == |
If you want to enable BioPortal's change request functionality for your ontology, please post a request on the [mailto:contact@bioportal.com BioPortal support] list. Include your ontology acronym in BioPortal, e.g., "MONDO", and the URL of the GitHub repository where your ontology is maintained, e.g., https://github.com/monarch-initiative/mondo. | If you want to enable BioPortal's change request functionality for your ontology, please post a request on the [mailto:contact@bioportal.com BioPortal support] list. Include your ontology acronym in BioPortal, e.g., "MONDO", and the URL of the GitHub repository where your ontology is maintained, e.g., https://github.com/monarch-initiative/mondo. |
Revision as of 17:01, 31 May 2024
BioPortal allows users to request changes or extensions to an ontology when the ontology source file is maintained in GitHub. The change request functionality is manually enabled on a per-ontology basis, and there are currently four ontologies in our repository for which change requests are enabled:
- Environment Ontology (ENVO)
- Gene Ontology (GO)
- Mondo Disease Ontology (MONDO)
- Uber Anatomy Ontology (UBERON)
Change requests are mirrored as GitHub issues in the repository where the ontology is maintained.
Supported change types
BioPortal supports several types of change requests including:
- Adding a synonym to a class
- Removing a synonym from a class
- Marking a class as obsolete
- Renaming a class
Support for more types of changes are in the works including, adding and removing definitions, adding classes, and deleting classes to name a few.
All of the change types that BioPortal supports are taken from the Knowledge Graph Change Language, a formal model for describing ontology change operations.
How to enable change requests for your ontology
If you want to enable BioPortal's change request functionality for your ontology, please post a request on the BioPortal support list. Include your ontology acronym in BioPortal, e.g., "MONDO", and the URL of the GitHub repository where your ontology is maintained, e.g., https://github.com/monarch-initiative/mondo.