Difference between revisions of "DRAFT AGENDA"
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| Line 5: | Line 5: | ||
* 9:00am Registration and Continental Breakfast | * 9:00am Registration and Continental Breakfast | ||
| − | * | + | |
| + | * Session 1 - Introduction | ||
''Moderator:'' | ''Moderator:'' | ||
* 10:00am Participant Self-Introductions | * 10:00am Participant Self-Introductions | ||
| − | * 10:15am | + | * 10:15am Barry Smith: Ontology, the OBO Foundry, and the Scope of this Meeting |
| − | * 11:00am | + | * 11:00am Refreshment Break |
| − | * 11:15am | + | |
| + | |||
| + | * 11:15am '''Session 2: Types of Pathways (Moderator: TBD)''' | ||
Topics: | Topics: | ||
| − | :: | + | ::(signalling pathways, metabolic pathways, ...) |
| − | |||
| − | |||
| − | |||
::What are the nodes? (molecules, pools of molecules?) | ::What are the nodes? (molecules, pools of molecules?) | ||
| + | |||
* 1:00pm Lunch Break | * 1:00pm Lunch Break | ||
| − | |||
| − | :: | + | |
| − | :: | + | * 2:00pm '''Session 3 - Existing Resources in Pathway Ontology (Moderator: TBD)''' |
| + | |||
| + | ::Ken Fukuda: INOH Pathway Database | ||
::Peter d'Eustachio: Reactome | ::Peter d'Eustachio: Reactome | ||
::BioPAX | ::BioPAX | ||
| Line 29: | Line 31: | ||
* 3:15pm Refreshment Break | * 3:15pm Refreshment Break | ||
| − | * 3:30pm Session 4 | + | * 3:30pm '''Session 4 - Gaps in Pathway Ontology (Moderator: Alan Ruttenberg) |
| − | ::Possible presenters? | + | '''::Possible presenters? |
* 5:00pm End of Day 1 | * 5:00pm End of Day 1 | ||
| − | '''Friday, March 28, 2008''' | + | '''Friday, March 28, 2008''' |
* 8:30am Continental Breakfast | * 8:30am Continental Breakfast | ||
| − | * 9:00am Session 3: Networks | + | * 9:00am Session 3: '''Types of Networks (Moderator: Richard Scheuermann) |
| + | '''::Types of networks (regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...) | ||
| + | ::Types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...) | ||
| + | ::Granularity (molecular, cellular, physiological) ... | ||
::Possible presenters? | ::Possible presenters? | ||
| Line 45: | Line 50: | ||
* 10:45am Refreshment Break | * 10:45am Refreshment Break | ||
| − | * Session 4 - Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions | + | * Session 4 - Existing Resources in Network Ontology (Moderator: TBD) |
| + | |||
| + | |||
| + | ::Balaji S. Srinivasan: Current Progress on Network Ontology | ||
| + | |||
| + | Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions | ||
(Moderator: Yves Lussier) | (Moderator: Yves Lussier) | ||
| Line 52: | Line 62: | ||
* 1pm Lunch Break | * 1pm Lunch Break | ||
| − | * 2:00 Session 5 - | + | * 2:00 Session 5 - Gaps in Network Ontology (Moderator: TBD) |
* 4:00pm End of Day 2 | * 4:00pm End of Day 2 | ||
Revision as of 11:36, 30 January 2008
Preliminary Agenda
Thursday, March 27, 2008
- 9:00am Registration and Continental Breakfast
- Session 1 - Introduction
Moderator:
- 10:00am Participant Self-Introductions
- 10:15am Barry Smith: Ontology, the OBO Foundry, and the Scope of this Meeting
- 11:00am Refreshment Break
- 11:15am Session 2: Types of Pathways (Moderator: TBD)
Topics:
- (signalling pathways, metabolic pathways, ...)
- What are the nodes? (molecules, pools of molecules?)
- 1:00pm Lunch Break
- 2:00pm Session 3 - Existing Resources in Pathway Ontology (Moderator: TBD)
- Ken Fukuda: INOH Pathway Database
- Peter d'Eustachio: Reactome
- BioPAX
- 3:15pm Refreshment Break
- 3:30pm Session 4 - Gaps in Pathway Ontology (Moderator: Alan Ruttenberg)
::Possible presenters?
- 5:00pm End of Day 1
Friday, March 28, 2008
- 8:30am Continental Breakfast
- 9:00am Session 3: Types of Networks (Moderator: Richard Scheuermann)
::Types of networks (regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
- Types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
- Granularity (molecular, cellular, physiological) ...
- Possible presenters?
- 10:45am Refreshment Break
- Session 4 - Existing Resources in Network Ontology (Moderator: TBD)
- Balaji S. Srinivasan: Current Progress on Network Ontology
Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions (Moderator: Yves Lussier)
- Possible presenters?
- 1pm Lunch Break
- 2:00 Session 5 - Gaps in Network Ontology (Moderator: TBD)
- 4:00pm End of Day 2