Difference between revisions of "DRAFT AGENDA"
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* 9:30am Participant Self-Introductions | * 9:30am Participant Self-Introductions | ||
| − | * Session 1 - | + | * 10:00am '''Session 1 - Biology of Pathways and Networks (Moderator: Lussier)''' |
| − | |||
:Potential presenters: | :Potential presenters: | ||
::Stuart Sealfon | ::Stuart Sealfon | ||
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::types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...) | ::types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...) | ||
::granularity (molecular, cellular, physiological) ... | ::granularity (molecular, cellular, physiological) ... | ||
| − | + | ::cellular networks and their surroundings: | |
| − | + | :::tissues, the extracellular matrix, and cell-environment interactions | |
* 11:00am Refreshment Break | * 11:00am Refreshment Break | ||
* 11:15am | * 11:15am | ||
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:Potential presenters | :Potential presenters | ||
| + | ::Lindsay Cowell | ||
::Barry Smith | ::Barry Smith | ||
::J. L. E. Mejino Jr. | ::J. L. E. Mejino Jr. | ||
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:Potential presenters: | :Potential presenters: | ||
| + | ::Bill Bug | ||
::Ken Fukuda: INOH Pathway Database | ::Ken Fukuda: INOH Pathway Database | ||
::Peter d'Eustachio: Reactome | ::Peter d'Eustachio: Reactome | ||
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* 11:00am '''Session 4 - Existing Resources in Network Ontology (Moderator: TBD)''' | * 11:00am '''Session 4 - Existing Resources in Network Ontology (Moderator: TBD)''' | ||
| − | + | * 12.30pm Lunch Break | |
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| − | * | + | * 1:30 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg) |
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| − | ::: | + | :Presenters and topics will include |
| + | ::Approaches to extending the OBO Foundry to include pathway and network ontologies | ||
* 4:00pm End of Day 2 | * 4:00pm End of Day 2 | ||
Revision as of 09:49, 4 February 2008
Preliminary Agenda
Thursday, March 27, 2008
Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD)
- 9:00am Registration and Continental Breakfast
- 9:30am Participant Self-Introductions
- 10:00am Session 1 - Biology of Pathways and Networks (Moderator: Lussier)
- Potential presenters:
- Stuart Sealfon
- Nancy Gough
- Chris Sander
- Yves Lussier
- Fiona Brinkman
- Potential topics:
- signalling pathways, metabolic pathways, ...
- regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
- types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
- granularity (molecular, cellular, physiological) ...
- cellular networks and their surroundings:
- tissues, the extracellular matrix, and cell-environment interactions
- 11:00am Refreshment Break
- 11:15am
- 12:30pm Lunch Break
- 1:30pm Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Ruttenberg)
- Potential presenters:
- Avi Ma'ayan
- Peter Lyster
- Andre Rhzetsky
- Oliver Ruebenacker
- Richard Scheuermann
- Andrea Splendiani
- 3:30pm Refreshment Break
- 3:45pm Session 3 - Introduction to Ontology (Moderator: Smith)
- Potential presenters
- Lindsay Cowell
- Barry Smith
- J. L. E. Mejino Jr.
- 5:00pm End of Day 1
Friday, March 28, 2008 - NETWORK DAY
- 8:30am Continental Breakfast
- 9:00am Session 4: Current Approaches to Pathway and Network Ontology (TBD) -
(Moderator: Richard Scheuermann)
- Potential presenters:
- Bill Bug
- Ken Fukuda: INOH Pathway Database
- Peter d'Eustachio: Reactome
- Balaji S. Srinivasan
- Chris Mungall
- 10:45am Refreshment Break
- 11:00am Session 4 - Existing Resources in Network Ontology (Moderator: TBD)
- 12.30pm Lunch Break
- 1:30 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)
- Presenters and topics will include
- Approaches to extending the OBO Foundry to include pathway and network ontologies
- 4:00pm End of Day 2