Difference between revisions of "BioPortal 2.0.1 (Label 1005) Release Notes"
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1. Protégé knowledge base caching enhancements | 1. Protégé knowledge base caching enhancements | ||
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2. Protégé Lucene implementation (OWL and PROTÉGÉ ontologies now use Lucene index instead of a direct database search) | 2. Protégé Lucene implementation (OWL and PROTÉGÉ ontologies now use Lucene index instead of a direct database search) | ||
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3. Protégé based search results are now correctly ordered by ranking | 3. Protégé based search results are now correctly ordered by ranking | ||
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4. Latest Marginal Notes and Latest Mappings sidebars added to the “Browse Ontologies” page | 4. Latest Marginal Notes and Latest Mappings sidebars added to the “Browse Ontologies” page | ||
=New REST Service Base URL= | =New REST Service Base URL= | ||
Note that we have updated the URL to rest services to a more permanent and intuitive version: http://rest.bioontology.org/bioportal and the port has changed from 8080 to the standard, 80. The old REST service links will still work, but going forward, we should distribute the above base URL for all our RESTful services. | Note that we have updated the URL to rest services to a more permanent and intuitive version: http://rest.bioontology.org/bioportal and the port has changed from 8080 to the standard, 80. The old REST service links will still work, but going forward, we should distribute the above base URL for all our RESTful services. | ||
Revision as of 09:30, 19 September 2008
Author: Misha Dorf 9/19/2008
We have completed a production release of the latest version of BioPortal 2.0 (labeled “1005”), designed to address numerous critical issues as well as implement a number of server optimizations, UI fixes, and performance enhancements. Here is the list of resolved issues and new features:
Bugs Fixes
Bug #703: Very large XML path to root document for TAO:0000578
Bug #541: BP should have the NCIT version that is available on the NCICB site and *not* pull it from OBO foundry
Bug #472: "Lost your password" doesn't work
Bug #531: URLs for BioPortal concepts
Bug #465: Uploaded ontology doesn't show up in list
Bug #562: When downloading mapping the user list is not up to date
Bug #515: After registration failure, can still edit metadata -- But no edits saved
Bug #644: Problem with Root to concept when on a top level node
Bug #490: Get a mapping icon next to a class that has no mappings
Bug #651: Cell Cycle Ontology - Incorrect Relationship and Ontology Navigation
Bug #496: Marginal note icon appears when there are no marginal notes
Bug #656: The "download" link for remote ontologies points to a wrong URL
Bug #493: Commas in the wrong place for properties with multiple values
Bug #560: The term "Element" in the resource tab must be replaced by "Annotations"
Bug #677: Flex visualization problem with deep paths
Bug #662: Cell Cycle Ontology Search and User problems
Bug #679: BioPortal hangs when clicking on some "Latest marginal notes"
Bug #593: Many ontology (ex Cell Type) have Explore links that are broken
Bug #482: Search Results - Concept does not load for NCI Thesaurus:Aspirin_Clopidogrel-Bisulfate
Bug #652: Exploring big ontologies in the Tree has very large lag time
Bug #550: Simply closing an ontology browsing tab can sometime take hours
Bug #521: Strip out language prefix (e.g. "~#en") from Owl rdfs:comment fields in the REST XML
New features
1. Protégé knowledge base caching enhancements
2. Protégé Lucene implementation (OWL and PROTÉGÉ ontologies now use Lucene index instead of a direct database search)
3. Protégé based search results are now correctly ordered by ranking
4. Latest Marginal Notes and Latest Mappings sidebars added to the “Browse Ontologies” page
New REST Service Base URL
Note that we have updated the URL to rest services to a more permanent and intuitive version: http://rest.bioontology.org/bioportal and the port has changed from 8080 to the standard, 80. The old REST service links will still work, but going forward, we should distribute the above base URL for all our RESTful services.