Difference between revisions of "Processing OBR Resources"
Jump to navigation
Jump to search
| Line 41: | Line 41: | ||
*Person responsible: Kuladip Yadav(Optra),Sanjay Jadhav(Optra). | *Person responsible: Kuladip Yadav(Optra),Sanjay Jadhav(Optra). | ||
*Notes: Fixed issue of authentication, fixed other xml related issues. | *Notes: Fixed issue of authentication, fixed other xml related issues. | ||
| − | *Status: Code verification & local testing in progress. | + | *Status: Code verification & local testing in progress.ET table data provided to Stanford for verification |
| − | *Last processed: 3/ | + | *Last processed: 3/10/2009. |
2. Resource: Geo- GSE | 2. Resource: Geo- GSE | ||
*Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra). | *Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra). | ||
*Notes:Built a new resource access tool to get data from GEO- GSE database(as of now a separate tool not integrated with GDS). | *Notes:Built a new resource access tool to get data from GEO- GSE database(as of now a separate tool not integrated with GDS). | ||
| − | *Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported annotations. | + | *Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported annotations.ET table data provided to Stanford for verification |
| − | *Last processed: 3/ | + | *Last processed: 3/10/2009. |
3. Resource: Pubmed | 3. Resource: Pubmed | ||
Revision as of 05:41, 10 March 2009
This page is for keeping track of what resources we process and what is done with each ResourceAccessTool. There are three main activities.
Reprocessing: Simple re-run of an existing ResourceAccessTool
1. Resource: CDD
- Person responsible: Adrien
- Status: annotations to process
- Last processed: 3/4/2009
2. Resource: OMIM
- Person responsible: Adrien
- Status: annotations to process
- Last processed: 3/4/2009
3. Resource: PharmGKB
- Person responsible: Adrien
- Status: annotations to process
- Last processed: 3/3/2009
4. Resource: Reactome
- Person responsible: Adrien
- Status: annotations to process
- Last processed: 3/3/2009
5. Resource: ResearchCrossroads
- Person responsible: Adrien
- Status: annotations to process
- Last processed: 3/4/2009
6. Resource: UniProt
- Person responsible: Adrien
- Status: annotations to process
- Last processed: 3/3/2009
Reprocessing: Modification of an existing ResourceAccessTool
Examples include GEO, ClinicalTrials, Pubmed.
1. Resource: Clinicaltrials.gov
- Person responsible: Kuladip Yadav(Optra),Sanjay Jadhav(Optra).
- Notes: Fixed issue of authentication, fixed other xml related issues.
- Status: Code verification & local testing in progress.ET table data provided to Stanford for verification
- Last processed: 3/10/2009.
2. Resource: Geo- GSE
- Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra).
- Notes:Built a new resource access tool to get data from GEO- GSE database(as of now a separate tool not integrated with GDS).
- Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported annotations.ET table data provided to Stanford for verification
- Last processed: 3/10/2009.
3. Resource: Pubmed
- Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra).
- Notes:Built a new resource access tool from existing PubMed3AccessTool to populate data from pubmed xml files .
- Status:Coding verification & local testing in progress.
- Last processed: 3/10/2009.
Writing a new ResourceAccessTools
Examples include CaNanoLab.