SWAT4LS Tutorial

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What You Need to Participate

  • BioPortal API Key - get your API Key by registering for an account on BioPortal
  • Computer with Internet connection
  • Software editor of your choice
  • Sample code will be demonstrated in both Java and Perl

Content

  • Introduction to REST Web services
  • NCBO BioPortal
  • NCBO REST Web services
    • Ontology Web services - Search, Traverse, Download
    • Notes Web service - Propose Terms, Comment
    • Mapping Web services - Create, Upload, Download
    • Widgets - Tree view, Auto-complete, Graph view
    • Annotation - Ontology Term recognition
    • Data Access - Fetch ontology-indexed data
  • BioPortal SPARQL Endpoint - Access Ontologies via SPARQL