CTS2 RDF Plugin

CTS2 REST Services

CodeSystemCatalogQuery

• Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems
  • Query with 'about' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=oid&filtercomponent=about
  • Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=nci&filtercomponent=resourceName
  • Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=databases&filtercomponent=resourceSynopsis
  • Query with 'keyword' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=100&filtercomponent=keyword
  • Query with 'bioportalId' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=1007&filtercomponent=ontologyId&referencetype=property
  • ('contains' and 'exactmatch' algorithms supported)
• 'Count' via HEAD call

CodeSystemCatalogRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/SNOMEDCT
• Read by uri: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystembyuri?uri=http://purl.bioontology.org/ontology/SNOMEDCT
• 'Exists' via HEAD call

CodeSystemCatalogVersionQuery

• Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions
• Query code system versions of code system: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/SNOMEDCT/versions
  • Query with 'about' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=oid&filtercomponent=about
  • Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=nci&filtercomponent=resourceName
  • Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=anatomy&filtercomponent=resourceSynopsis
  • ('contains' and 'exactmatch' algorithms supported)
• 'Count' via HEAD call

CodeSystemVersionCatalogRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/LNC/version/LNC_226_RRF
• Or OfficialResourceVersionId: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/LNC/version/226
• 'Exists' via HEAD call

EntityDescriptionQuery

• Query with 'description' http://informatics.mayo.edu/cts2/services/bioportal-rdf/entities?matchvalue=swelling
• Get all entities of code system version: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/AIR/version/AIR_1993_RRF/entities
• Query entities of code system version with 'keyword' filter: http://informatics.mayo.edu/cts2/rest/codesystem/LNC/version/LNC_226_RRF/entities?matchvalue=100
  • ('contains' and 'exactmatch' algorithms supported)
• 'Count' via HEAD call

EntityDescriptionRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/LNC/version/LNC_226_RRF/entity/LP31957-1
• Or using CSV OfficialResourceVersionId : http://informatics.mayo.edu/cts2/rest/codesystem/LNC/version/226/entity/LP31957-1

  NOTE: Does not support Entity lookup by URI (See notes below)

• 'Exists' via HEAD call

ValueSetCatalogQuery

• Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets
  • Query with 'about' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?matchvalue=FMA_subset&filtercomponent=about
  • Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?matchvalue=set&filtercomponent=resourceName
  • Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?matchvalue=anatomy&filtercomponent=resourceSynopsis
  • Query based on code system restriction: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?codesystem=SNOMEDCT
  • ('contains' and 'exactmatch' algorithms supported)
• 'Count' via HEAD call

ValueSetCatalogRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SNOMEDCT-MAS
• 'Exists' via HEAD call

ValueSetDefinitionQuery

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definitions
• 'Exists' via HEAD call

ValueSetDefinitionRead

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definition/42157
• 'Exists' via HEAD call

ValueSetDefinitionResolutionService

• Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definition/42157/resolution?resolutiontype=entitydirectory
• 'Exists' via HEAD call

AssociationQuery

• Query 'sourceOf' associations of entity: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/entity/100001001/sourceof
• Query 'children' associations of entity: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/MSH/version/MSH_2009_2009_02_13_RRF/entity/D006321/children

AdvancedAssociationQuery

• Get root nodes of a code system version: http://informatics.mayo.edu/cts2/rest/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/graph?focus=TOP_NODE&direction=FORWARD
• Get graph of focusn node in code system version:http://informatics.mayo.edu/cts2/rest/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/graph?focus=243796009&direction=FORWARD
• NOTES: Currently only supports direction=FORWARD and depth=1

SVN

SVN url