Difference between revisions of "Toolbox"
(New page: == Morning session 09/20/07 == == Data == TBDB (TB Data + Microarray) SMD (Stanford Microarray Data) Dengue Case Data Insect/Vector Epidemiological Data (Gates Funded) Proteomics ...) |
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== Morning session 09/20/07 == | == Morning session 09/20/07 == | ||
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SMD (Stanford Microarray Data) | SMD (Stanford Microarray Data) | ||
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| + | Virulence Factor DB | ||
Dengue Case Data | Dengue Case Data | ||
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NIAID -> PIR | NIAID -> PIR | ||
| + | Univ. of Michigan: Vaccine DB | ||
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| + | [http://pathport.vbi.vt.edu/pathinfo/ PathPort]: The Pathogen Portal Project | ||
== Existing Ontologies == | == Existing Ontologies == | ||
| − | GO | + | GO [http://www.geneontology.org/] (PAMGO [http://pamgo.vbi.vt.edu/], Immune System Process) |
| − | + | FMA [http://sig.biostr.washington.edu/projects/fm/] | |
| − | + | CARO [http://www.bioontology.org/wiki/index.php/CARO:Main_Page] | |
| − | + | D.O. [http://diseaseontology.sourceforge.net/] | |
| − | + | EnvO [http://www.obofoundry.org/cgi-bin/detail.cgi?id=envo] | |
| − | + | ChEBI [http://www.ebi.ac.uk/chebi/] | |
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| + | PRO [http://pir.georgetown.edu/pro/] | ||
| + | OBI [http://obi.sourceforge.net/index.php] | ||
== Agenda: == | == Agenda: == | ||
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additional relations | additional relations | ||
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| + | == Future plans == | ||
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| + | Contributions: | ||
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| + | Univ. of Michigan: Brucellosis | ||
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| + | Crete: Vector-born diseases (Malaria) | ||
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| + | CSU: Dengue | ||
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| + | UT Southwestern: Pathogen-related terms | ||
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| + | Cleveland Clinic: Infective endocarditis | ||
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| + | MITRE: Influenza | ||
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| + | Mt. Sinai: Influenza | ||
Latest revision as of 13:42, 20 September 2007
Morning session 09/20/07
Data
TBDB (TB Data + Microarray)
SMD (Stanford Microarray Data)
Virulence Factor DB
Dengue Case Data
Insect/Vector Epidemiological Data (Gates Funded)
Proteomics Data (comparative data on strains of pathogens)
GOA for plants adn animals (response to other organism)
Sequence data for Influenza (infected animal)
NIAID -> PIR
Univ. of Michigan: Vaccine DB
PathPort: The Pathogen Portal Project
Existing Ontologies
GO [1] (PAMGO [2], Immune System Process)
FMA [3]
CARO [4]
D.O. [5]
EnvO [6]
ChEBI [7]
PRO [8]
OBI [9]
Agenda:
scope
term list
BFO type
taxonomy
additional relations
Future plans
Contributions:
Univ. of Michigan: Brucellosis
Crete: Vector-born diseases (Malaria)
CSU: Dengue
UT Southwestern: Pathogen-related terms
Cleveland Clinic: Infective endocarditis
MITRE: Influenza
Mt. Sinai: Influenza