Toolbox

Data

TBDB (TB Data + Microarray)

SMD (Stanford Microarray Data)

Virulence Factor DB

Dengue Case Data

Insect/Vector Epidemiological Data (Gates Funded)

Proteomics Data (comparative data on strains of pathogens)

GOA for plants adn animals (response to other organism)

Sequence data for Influenza (infected animal)

NIAID -> PIR

Univ. of Michigan: Vaccine DB

PathPort: The Pathogen Portal Project

Existing Ontologies

GO [1] (PAMGO [2], Immune System Process)

FMA [3]

CARO [4]

D.O. [5]

EnvO [6]

ChEBI [7]

PRO [8]

OBI [9]

Agenda:

scope

term list

BFO type

taxonomy

additional relations

Future plans

Contributions:

Univ. of Michigan: Brucellosis

Crete: Vector-born diseases (Malaria)

CSU: Dengue

UT Southwestern: Pathogen-related terms

Cleveland Clinic: Infective endocarditis

MITRE: Influenza

Mt. Sinai: Influenza