OBD:Data Download

Download raw database dump

• http://www.berkeleybop.org/obd/dumps

These are postgresql dumps and can be reconstituted locally

• http://www.berkeleybop.org/obd/dumps/reports/
• http://www.berkeleybop.org/obd/dumps/exports/

Availability: now

Raw OWL or RDF dumps

Not yet available

Unfortunately this crashes D2RQ..

RESTful access

Subsets of data in OBD are resources in their own right. It will soon be possible to directly access any portion of OBD via RESTful URLs

Examples:

• All annotations in OBD-Phenotype subset
• All annotations to entities in OMIM IDspace
• All annotations contributed by ZFIN
• All annotations to classes in FMA
• All annotations added since date

We will need some caching mechanism in place rather than recomputing these each time

Select exports

Pre-computed dumps for select datasets