Difference between revisions of "CL:Main Page"
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Notes and action items from the cell ontology breakout session at the 2nd International Biocuration Meeting 2007. | Notes and action items from the cell ontology breakout session at the 2nd International Biocuration Meeting 2007. | ||
[[Media:Cell_ontology_reorganization_working_group_notes.doc|Cell_ontology_reorganization_working_group_notes.doc]] | [[Media:Cell_ontology_reorganization_working_group_notes.doc|Cell_ontology_reorganization_working_group_notes.doc]] | ||
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| + | ==NIAID Cell Ontology Workshop, May 13-14, 2008== | ||
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| + | The NIAID is sponsoring a Cell Ontology Workshop, May 13-14, 2008, in Bethesda, focusing on improving representation of immune cell types in the Cell Ontology. The intent of this workshop is to extend the current ontology in the area of immune cell types, and work toward providing the necessary information for the upcoming restructuring of the Cell Ontology in single-inheritance form with genus-differentia definitions. | ||
Revision as of 08:10, 9 May 2008
CL - OBO Cell Ontology
Resources
Ontology
Will soon be available from NCBO BioPortal. For now you should just obtain it from http://obo.sourceforge.net
Applications
CL:Aligning species-specific anatomy ontologies with CL
CL_alignment_Biocurator07_poster
Request tracker
You can also submit requests to the list.
Mail Lists
- OBO Cell
The following list may also be of interest
GO is pre-coordinating biological process terms that refer to cell types using CL IDs
Cell ontology restructuring efforts
The cell ontology is being restructured with the general goals of improving definitions, moving towards single inheritance and is_a completeness, and making the CL more interoperable with the GO and CARO. These discussions are occurring via chat, the histories of which will be posted here. Please email the OBO cell list if you would like to participate.
An initial rough draft can be found below in OBO format with the proposed new branch at the same level as 'cell'. Current tasks include moving cells over to the 'by structure' branch to test for compatibility and potential problems.
Notes and action items from the cell ontology breakout session at the 2nd International Biocuration Meeting 2007.
Cell_ontology_reorganization_working_group_notes.doc
NIAID Cell Ontology Workshop, May 13-14, 2008
The NIAID is sponsoring a Cell Ontology Workshop, May 13-14, 2008, in Bethesda, focusing on improving representation of immune cell types in the Cell Ontology. The intent of this workshop is to extend the current ontology in the area of immune cell types, and work toward providing the necessary information for the upcoming restructuring of the Cell Ontology in single-inheritance form with genus-differentia definitions.
A list of useful differentia for defining cell-type terms
has_part: <GO:cellular_compomnent>
has_function_from_process: <GO:biological_process>
has_quality: <PATO:quality/monadic quality of continuant>
develops_into: <CL:cell>
has_part: <CHEBI:chebi_ontology>
has_part: (<CHEBI:chebi_ontology>^part_of <GO:cellular_component>)